 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010558901.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
| Family |
C3H |
| Protein Properties |
Length: 357aa MW: 40274.5 Da PI: 7.6085 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010558901.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 27.3 | 6.4e-09 | 39 | 60 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+ +C+f+++ G+C+yG+rC++ H
XP_010558901.1 39 RNICSFYQK-GICSYGSRCRYEH 60
568******.***********88 PP
|
| 2 | zf-CCCH | 21.9 | 3.2e-07 | 139 | 161 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ fa+ G C++GdrC+ +Hg
XP_010558901.1 139 RPICS-FAAAGDCQRGDRCPHIHG 161
899**.**************9998 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 5.2E-5 | 9 | 34 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.01E-7 | 11 | 33 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.742 | 13 | 35 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.976 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.7E-4 | 37 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.62E-5 | 39 | 60 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-6 | 39 | 61 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 41 | 60 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.206 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.7E-4 | 137 | 162 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.5E-4 | 139 | 161 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 4.42E-13 | 193 | 269 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 2.0E-10 | 197 | 265 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 0.00329 | 204 | 264 | No hit | No description |
| SMART | SM00184 | 2.5E-7 | 205 | 262 | IPR001841 | Zinc finger, RING-type |
| PROSITE profile | PS50089 | 12.416 | 205 | 263 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 9.1E-8 | 205 | 262 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE pattern | PS00518 | 0 | 229 | 238 | IPR017907 | Zinc finger, RING-type, conserved site |
| PROSITE profile | PS50103 | 14.286 | 292 | 321 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.39 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
CGLHRYFCLF RILCKFFIQG ACLKGEHCEY SHDLNGSARN ICSFYQKGIC SYGSRCRYEH 60
VNASQSLSSS SSAWNIPRRP LSSDSEPVAR SSQLGPASAE HSSLFTPTEP AWNLQNGVDC 120
GWEKEDASAP RIDVQPRDRP ICSFAAAGDC QRGDRCPHIH GDLCPTCGKN CLHPFRPEER 180
EEHTKECEKK QKHVEALKHS QDIECSVCLD RVLSKPTPAE RKFGLLTECD HPFCIQCIRN 240
WRSSAPVSGM DVNNTLRACP ICRKRSYFVV PSVVWYSTPE EKNEIINTYK AKLRSIDCKH 300
FNFGNGTCPF GTSCFYKHAY PDGRLEEVVL RHLGSQDGEI VIADNIRLSD FLGDLRI
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
