PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558901.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 357aa    MW: 40274.5 Da    PI: 7.6085
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558901.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.4e-093960325
                    S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                    + +C+f+++ G+C+yG+rC++ H
  XP_010558901.1 39 RNICSFYQK-GICSYGSRCRYEH 60
                    568******.***********88 PP
2zf-CCCH21.93.2e-07139161326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G C++GdrC+ +Hg
  XP_010558901.1 139 RPICS-FAAAGDCQRGDRCPHIHG 161
                     899**.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-5934IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-71133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7421335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763663IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-43762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-53960IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-63961IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-44160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206136163IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-4137162IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4139161IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.42E-13193269No hitNo description
Gene3DG3DSA:3.30.40.102.0E-10197265IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00329204264No hitNo description
SMARTSM001842.5E-7205262IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.416205263IPR001841Zinc finger, RING-type
PfamPF000979.1E-8205262IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180229238IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010314.286292321IPR000571Zinc finger, CCCH-type
SMARTSM003560.39292320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
CGLHRYFCLF RILCKFFIQG ACLKGEHCEY SHDLNGSARN ICSFYQKGIC SYGSRCRYEH  60
VNASQSLSSS SSAWNIPRRP LSSDSEPVAR SSQLGPASAE HSSLFTPTEP AWNLQNGVDC  120
GWEKEDASAP RIDVQPRDRP ICSFAAAGDC QRGDRCPHIH GDLCPTCGKN CLHPFRPEER  180
EEHTKECEKK QKHVEALKHS QDIECSVCLD RVLSKPTPAE RKFGLLTECD HPFCIQCIRN  240
WRSSAPVSGM DVNNTLRACP ICRKRSYFVV PSVVWYSTPE EKNEIINTYK AKLRSIDCKH  300
FNFGNGTCPF GTSCFYKHAY PDGRLEEVVL RHLGSQDGEI VIADNIRLSD FLGDLRI
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558901.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558901.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like, partial
SwissprotQ6IDS61e-174C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLV4LZC71e-173V4LZC7_EUTSA; Uncharacterized protein
STRINGXP_010558901.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-163C3H family protein