PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558889.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 337aa    MW: 38004.4 Da    PI: 9.7126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05142163223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C +Cgk+F +k++L  H+r+H
  XP_010558889.1 142 SCCICGKVFLTKHSLFGHMRRH 163
                     7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.31E-86387No hitNo description
SMARTSM003550.0826587IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9726592IPR007087Zinc finger, C2H2
PfamPF139121.3E-46587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SuperFamilySSF576676.31E-8136163No hitNo description
PROSITE profilePS501579.764141163IPR007087Zinc finger, C2H2
SMARTSM003550.027141163IPR015880Zinc finger, C2H2-like
PfamPF138943.7E-4142163No hitNo description
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MITCMEMKRN ARNPFADQSV HDSSSSSESE ELHRPEKKLR LKVKIPAKPN EEQNTNPSPP  60
PRRRHFCEVC NKEFSSGKAF GGHVRIHSIE YKSKNKSKMM KKNKNSTVKK KKKNKEKNMK  120
RIEKEERDLM GRADVEEGGE ISCCICGKVF LTKHSLFGHM RRHPDRSWKG IRPPPPPLPE  180
SEFELRMMSV AAGSSSSSKK FKISSCTSDL DDDYDDVLDV TSTSMTDVQE AAYCLMMLSC  240
ARINYRPVKS LGFGLESSSG DMGKAKPGVR NPCPREETRH GYQMGSSKGK GVVVDMKMKI  300
GSGDRFHVRA REEKVLGFDL NQPYVGGEDG GDDWFQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107114VKKKKKNK
2109120KKKKNKEKNMKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558889.10.0PREDICTED: zinc finger protein AZF1
STRINGXP_010558889.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.13e-33C2H2 family protein