PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558878.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 173aa    MW: 19016.7 Da    PI: 11.4466
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like841.6e-2696149155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++WtpeL +rF+++v++L G ++A+Pk+i+++m+v+gL++ +v+SHLQkYRl
  XP_010558878.1  96 KQRIVWTPELQRRFLDVVRRL-GVNNAVPKAIMQMMNVEGLSRMNVASHLQKYRL 149
                     79*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.77793152IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2793153IPR009057Homeodomain-like
SuperFamilySSF466891.65E-1994153IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-2396149IPR006447Myb domain, plants
PfamPF002491.6E-7100148IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGQFRADVIN GADAGGGNKG LVEREVRLPT GADLPLLYQL LIPQGLASAF RISPQQNPTV  60
ADVDRASVTT FYSIQSGSVS NAPPHPERKA ETARKKQRIV WTPELQRRFL DVVRRLGVNN  120
AVPKAIMQMM NVEGLSRMNV ASHLQKYRLY LKRRQGFTGG DATSSSSRRG ING
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-2598152357Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558878.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558878.11e-125PREDICTED: transcription factor BOA-like
SwissprotQ9LTH46e-38PCLL_ARATH; Transcription factor BOA
TrEMBLM4EYB77e-40M4EYB7_BRARP; Uncharacterized protein
STRINGXP_010558878.11e-124(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15903712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.12e-40G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]