![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010558832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 212aa MW: 25082.1 Da PI: 8.7911 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.3 | 9.6e-17 | 35 | 89 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ +f++eq++ L+e Fek+++++ +++ e A++l+L+ +qV +WFqN+Ra k XP_010558832.1 35 QKKKRFSEEQIKWLKEIFEKEKKLDPRRKMEVARQLRLEPKQVAIWFQNKRASSK 89 67889***********************************************988 PP | |||||||
2 | HD-ZIP_I/II | 96.1 | 3.7e-31 | 35 | 127 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+r+s+eq+k L e Fe+e+kL+p+rK+e+ar+L+l+p+qva+WFqn+RA k+kql +d+++L+ +yd l+++ ++ +e+++L +++++ XP_010558832.1 35 QKKKRFSEEQIKWLKEIFEKEKKLDPRRKMEVARQLRLEPKQVAIWFQNKRASSKSKQLQTDFATLRVHYDCLARDFQKSLEEKHHLLSQVQK 127 69***************************************************************************9999999999999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-15 | 27 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 31 | 91 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.19E-15 | 33 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.17E-12 | 34 | 92 | No hit | No description |
SMART | SM00389 | 5.6E-11 | 34 | 95 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-14 | 34 | 89 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.9E-8 | 91 | 131 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MEKQSYVHGE RERSYQWRNE DFDFSRNSNC KEEKQKKKRF SEEQIKWLKE IFEKEKKLDP 60 RRKMEVARQL RLEPKQVAIW FQNKRASSKS KQLQTDFATL RVHYDCLARD FQKSLEEKHH 120 LLSQVQKLRA QTSEKQRVKS LDQDSEVDRE IDNRDHGNRA GIEPDGKVGS SGESTKTAEF 180 GSTGSEDLLF KSEVYSWALS DKWAELLECL GF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010558832.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558832.1 | 1e-154 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | XP_010558832.1 | 1e-154 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-29 | homeobox 7 |