PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558591.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 397aa    MW: 43745.3 Da    PI: 8.0926
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-104672127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C ++ rtG C++G++C+F+H++
  XP_010558591.1 46 PGEPDCAYYIRTGLCRFGSTCRFNHPR 72
                    5789*********************96 PP
2zf-CCCH38.32.3e-1293117327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G +CkF+H++
  XP_010558591.1  93 QPECQYYLKTGTCKFGVTCKFHHPR 117
                     799********************96 PP
3zf-CCCH37.92.9e-12139163327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +++rtG+Ck+G++CkF+H+p
  XP_010558591.1 139 EVDCAYYLRTGHCKFGSTCKFNHPP 163
                     689********************97 PP
4zf-CCCH38.61.8e-12278304127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ CkF+H++
  XP_010558591.1 278 PGQPECQFYMKTGDCKFGSVCKFHHPR 304
                     5789*********************96 PP
5zf-CCCH39.41e-12324350127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_010558591.1 324 PGEPLCGFYSRYGICKFGPSCKFDHPM 350
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4644573IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-44572IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-74772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-45172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.39990118IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-590117IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-1093117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-694120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-496117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76136164IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6138163IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4142161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596277305IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-6277304IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6281307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4283304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84323351IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-7323350IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-10325350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5326351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDLDAGVSMS RISGTSLLPL LNQDAMWQMN LSSDETMEGG AYPDRPGEPD CAYYIRTGLC  60
RFGSTCRFNH PRDRNLAIAT ARMKGEYPER IGQPECQYYL KTGTCKFGVT CKFHHPRNKV  120
GIAGNVSLNA LGYPIRPNEV DCAYYLRTGH CKFGSTCKFN HPPPTNLMAP LRGSSVYPAV  180
QSPSAGQQSY SWSRASFIAN PPWQDPSSSS FASLVLPQGM VSVQGWNTYS GQLGSVYSSG  240
SRNQVAGNDH NYRDLLQNEA KESGFYALPR ENVFPEKPGQ PECQFYMKTG DCKFGSVCKF  300
HHPRNRQNPA PDCVLSPIGL PLRPGEPLCG FYSRYGICKF GPSCKFDHPM QRVFTSMNPE  360
ETQLGNLLGS SASTNLSSED ELVETPSAAK TQKVLCV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558591.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558591.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLV4M4F10.0V4M4F1_EUTSA; Uncharacterized protein
STRINGXP_010558591.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]