PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558536.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 172aa MW: 20203.5 Da PI: 7.144

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558536.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.7	1.6e-15	82	139	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +++rr+++NRe+ArrsR RK+ ++eL v+ L +eN++L+++l++ ++ +++ +e XP_010558536.1 82 RKQRRMISNRESARRSRMRKQRHLDELLSQVAWLRKENHQLIDKLNQVSESHDRVLQE 139 689********************************************99988887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-14	78	142	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.151	80	143	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.8E-12	81	132	No hit	No description
SuperFamily	SSF57959	6.43E-13	82	132	No hit	No description
Pfam	PF00170	8.9E-14	82	140	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.33E-19	83	134	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MKPSDGSGLY YLVPPSPSPH SAYFSTINNM QDFHLNQYLN PSCNFSIHPQ VQELNLQSPC 60 FSNNSTSDEA DEQQVSIIIN ERKQRRMISN RESARRSRMR KQRHLDELLS QVAWLRKENH 120 QLIDKLNQVS ESHDRVLQEN TQLKEETSEL RQLVSTMKLR SQYSYFEDFP SN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	101	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00512	DAP	Transfer from AT5G15830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558536.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ415921	0.0	DQ415921.1 Cleome spinosa clone BAC Cs2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558536.1	1e-125	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	4e-41	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	Q1KUT4	1e-123	Q1KUT4_9ROSI; Uncharacterized protein
STRING	XP_010558536.1	1e-124	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3112	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	2e-52	basic leucine-zipper 42

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]