PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558510.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SBP

Protein Properties

Length: 800aa MW: 89929.2 Da PI: 7.8786

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558510.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.1	4.4e-37	137	213	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCead+se+k yhrrh+vC +++a++v+++g+++r+CqqC++fh+ls+fDe+krsCrr+L++hn+rr++k XP_010558510.1 137 RCQVPGCEADISELKGYHRRHRVCLRCANASSVVLDGETKRYCQQCGKFHMLSDFDEGKRSCRRKLERHNNRRKRKP 213 6************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.8E-30	130	199	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.607	135	212	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.62E-34	136	215	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-27	138	211	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence Send to blast
MSSASPSSSA PEMELQPPAI VDGDPSALSA AVWDWGDLLD FALDDRLLVS FDSDQPPFSA 60 APPPQNQPLE SESDPSPGSS SGSDRVRKRD PRLTCSNFLE GRIPCSCPEI DQRLEEAELP 120 TKKRVRGGGR GGSGLARCQV PGCEADISEL KGYHRRHRVC LRCANASSVV LDGETKRYCQ 180 QCGKFHMLSD FDEGKRSCRR KLERHNNRRK RKPVDKGDGD EKHQQAALQN ENSVIDVDDE 240 KDNICSIDQR AEQEASLDFE YEKNCGQGAV PIPQSINADS FVSFAAQTDE GKNDTKFEHS 300 PLYGDNRSAY SSECPTGRIS FKLYDWNPAE FPRRLRHQIF QWLAAMPVEL ESYIRPGCTI 360 LTVFIAMPEI MWAKLSKDPV AYLDEFILKP GKMLFGRGSM TVYLNNMIFR LMRGGTSVKR 420 VDIKLQAPRL QFVYPTCFKA GKPIELIICG RNFLQPKFRF LVSFSGKYLP YNYSVISSPN 480 QDGKSSRCCC NKLYKINVVN SDPNLFGPAF VEVENESGLS NFIPLIIGDE AICSEMKLIE 540 QKFNATLFIK LTSQITRRYD RQRQTAFSGL LLDIAWSVKA PTSECRGQNM NLCQIRRFNR 600 VLDYLIRSNS VSILEKVLQN LETLLNKMEP DSVIHCTSDS DVRLLHENMN MARDINRKRQ 660 SHEQSMTNFG NDLPSSNCDC GCDCGCGCKS SFQKDAPSRT SNINQDPEAG LVSKQGKQRV 720 ARRETDPLLS KEFVMNVDGV RDWPRNSCSP VYPVQAFRSR PTAFIITTLI LCFTVCAVLY 780 HPNRVTAFAV AVRTRLAHET

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence Send to blast

MSSASPSSSA PEMELQPPAI VDGDPSALSA AVWDWGDLLD FALDDRLLVS FDSDQPPFSA  60
APPPQNQPLE SESDPSPGSS SGSDRVRKRD PRLTCSNFLE GRIPCSCPEI DQRLEEAELP  120
TKKRVRGGGR GGSGLARCQV PGCEADISEL KGYHRRHRVC LRCANASSVV LDGETKRYCQ  180
QCGKFHMLSD FDEGKRSCRR KLERHNNRRK RKPVDKGDGD EKHQQAALQN ENSVIDVDDE  240
KDNICSIDQR AEQEASLDFE YEKNCGQGAV PIPQSINADS FVSFAAQTDE GKNDTKFEHS  300
PLYGDNRSAY SSECPTGRIS FKLYDWNPAE FPRRLRHQIF QWLAAMPVEL ESYIRPGCTI  360
LTVFIAMPEI MWAKLSKDPV AYLDEFILKP GKMLFGRGSM TVYLNNMIFR LMRGGTSVKR  420
VDIKLQAPRL QFVYPTCFKA GKPIELIICG RNFLQPKFRF LVSFSGKYLP YNYSVISSPN  480
QDGKSSRCCC NKLYKINVVN SDPNLFGPAF VEVENESGLS NFIPLIIGDE AICSEMKLIE  540
QKFNATLFIK LTSQITRRYD RQRQTAFSGL LLDIAWSVKA PTSECRGQNM NLCQIRRFNR  600
VLDYLIRSNS VSILEKVLQN LETLLNKMEP DSVIHCTSDS DVRLLHENMN MARDINRKRQ  660
SHEQSMTNFG NDLPSSNCDC GCDCGCGCKS SFQKDAPSRT SNINQDPEAG LVSKQGKQRV  720
ARRETDPLLS KEFVMNVDGV RDWPRNSCSP VYPVQAFRSR PTAFIITTLI LCFTVCAVLY  780
HPNRVTAFAV AVRTRLAHET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	1e-45	135	217	3	85	squamosa promoter binding protein-like 7
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269\|PubMed:19122104, ECO:0000269\|PubMed:22374396, ECO:0000269\|PubMed:25516599, ECO:0000269\|PubMed:26511915, ECO:0000269\|PubMed:27352843}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ415921	0.0	DQ415921.1 Cleome spinosa clone BAC Cs2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019059672.1	0.0	PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 7
Swissprot	Q8S9G8	0.0	SPL7_ARATH; Squamosa promoter-binding-like protein 7
TrEMBL	Q1KUV0	0.0	Q1KUV0_9ROSI; Uncharacterized protein
STRING	XP_010558510.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6358	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	squamosa promoter binding protein-like 7

Publications ? help Back to Top
Zhang H, et al. MicroRNA408 is critical for the HY5-SPL7 gene network that mediates the coordinated response to light and copper. Plant Cell, 2014. 26(12): p. 4933-53 [PMID:25516599] Zhao Y, et al. MicroRNA857 Is Involved in the Regulation of Secondary Growth of Vascular Tissues in Arabidopsis. Plant Physiol., 2015. 169(4): p. 2539-52 [PMID:26511915] Perea-García A, et al. Modulation of copper deficiency responses by diurnal and circadian rhythms in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(1): p. 391-403 [PMID:26516126] Gielen H,Remans T,Vangronsveld J,Cuypers A Toxicity responses of Cu and Cd: the involvement of miRNAs and the transcription factor SPL7. BMC Plant Biol., 2016. 16(1): p. 145 [PMID:27352843] Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014] Araki R, et al. SPL7 locally regulates copper-homeostasis-related genes in Arabidopsis. J. Plant Physiol., 2018. [PMID:29635212]