PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558334.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 293aa    MW: 33580.5 Da    PI: 6.6087
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.5e-32120176258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDgy+WrKYGqK++k+s++prsYY+Ct ++C++kk+vers +dp++++itYeg H h
  XP_010558334.1 120 DDGYKWRKYGQKSIKNSPNPRSYYKCTNTRCNAKKQVERSIDDPDTFIITYEGLHLH 176
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-29113176IPR003657WRKY domain
PROSITE profilePS5081127.692114176IPR003657WRKY domain
SuperFamilySSF1182901.18E-26117176IPR003657WRKY domain
SMARTSM007744.9E-35119178IPR003657WRKY domain
PfamPF031067.2E-26120176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEEQRASEWF RGYEKEEVMN ELLANEPHLL LQEEEEEELV RPETDRNCPE KDFTNRLIST  60
LYSGPRIKDI EDALSVVEPR TESAHQMVSM SRAPLLERDL SKMEHRYTLK VKNSGNGMGD  120
DGYKWRKYGQ KSIKNSPNPR SYYKCTNTRC NAKKQVERSI DDPDTFIITY EGLHLHFTYP  180
FFLPDKAHRP IKKPKPSTPE AHQAQETQPS VQAHKAQEEA SRRFLSEEEL FPALDHRRQR  240
QGLLEDVVAP AIRNIPAKDP VSDSCSSSSS SSGRSLSPPS SAMARSPNLS PFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-181201761874Probable WRKY transcription factor 4
2lex_A3e-181201761874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558334.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558334.10.0PREDICTED: probable WRKY transcription factor 49
SwissprotQ9FHR72e-76WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLV4NF493e-83V4NF49_EUTSA; Uncharacterized protein
STRINGXP_010558334.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.16e-78WRKY DNA-binding protein 49