PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558117.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 320aa    MW: 34767 Da    PI: 6.8023
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-30117170155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti+++m+v+gLt+e+v+SHLQkYRl
  XP_010558117.1 117 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQMMSVDGLTRENVASHLQKYRL 170
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-20114174IPR009057Homeodomain-like
PROSITE profilePS5129410.84114173IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-30116175IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-24118170IPR006447Myb domain, plants
PfamPF002495.4E-8120169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MLPSNICPGL SDRLVNLSFV FPRMREEESN WFARWEEELP SPEELMPLSQ SLITPDLALA  60
FDIRSPNSDS GQGHPPSATL QPPPPSSQAN SSAEFAADSA DLGSGAAGDE PARTLKRPRL  120
VWTPQLHKRF VDAVAHLGIK NAVPKTIMQM MSVDGLTREN VASHLQKYRL YLKRMQGLSS  180
GGGSGGAVSD PAMDNLFASS PVPAHFLHPT RGPSSDHFMP AFVPMAMLQQ QQQMAATATA  240
TANPHLQPPH FHHRQMTHFG SPTNGQFEHS FLAARQTQQQ GHRMGAALHS TVANSYGEDL  300
ESANANGGRT VLTLFPPRDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-32117173157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558117.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558117.10.0PREDICTED: transcription factor PCL1-like isoform X2
RefseqXP_019059721.10.0PREDICTED: transcription factor PCL1-like isoform X1
SwissprotO222105e-69MYBC1_ARATH; Transcription factor MYBC1
TrEMBLR0HMQ61e-134R0HMQ6_9BRAS; Uncharacterized protein
STRINGXP_010558117.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-99G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]