PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WRKY | ||||||||
Protein Properties | Length: 480aa MW: 52333.4 Da PI: 6.3102 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.1 | 1.8e-28 | 115 | 173 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ++DgynWrKYGqK vkg+ef rsYYrCt ++C++kk++e+s +++v ++Y g+H h+k XP_010557702.1 115 MEDGYNWRKYGQKLVKGNEFIRSYYRCTNPNCTAKKQLEQSP-GGQIVGTVYFGQHVHPK 173 58****************************************.***************85 PP | |||||||
2 | WRKY | 106.1 | 1.8e-33 | 291 | 349 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d k++++tYeg+H+h+ XP_010557702.1 291 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSQDAKLLITTYEGKHDHD 349 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.322 | 110 | 174 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-23 | 111 | 174 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.5E-25 | 111 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-32 | 115 | 173 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-22 | 116 | 172 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.0E-35 | 277 | 351 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-28 | 285 | 351 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.716 | 286 | 351 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 291 | 350 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 292 | 348 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MSTEVKVPDC ETELGPPQEA KASEASSTDK IESRPDTDTG TYDSDKTMEE ASEQCQEEAP 60 ESAKPEELKA VPITETLQPR DMASSEKPPK APECSALSLH SASEGSSPFI REKVMEDGYN 120 WRKYGQKLVK GNEFIRSYYR CTNPNCTAKK QLEQSPGGQI VGTVYFGQHV HPKPIGNHSA 180 TGAILPINEH KPKDLSAAVN KEKSCGSRVQ TPQRAEPTAH KGLQVSVISS VDEVKTAILQ 240 SSRIKGESHN SVSPGSKRRK QDGGNTEQSP VDRSRNESRI VVHTQTLFDI VNDGYRWRKY 300 GQKSVKGSPY PRSYYRCSSS GCPVKKHVER SSQDAKLLIT TYEGKHDHDM PPGRIVTPNT 360 MDSEADKAGS KEPSSKGGDG NKNLQSSVVQ IVADDQVADD ESRTKPEQSS TTNGLNQGSI 420 SDVKPEEQKK NRSDQTKEDE RGSLAESGTN PEDKTGSRQE TGAGTEDRAC PETNPPVSGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-47 | 114 | 353 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557702.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557701.1 | 0.0 | PREDICTED: WRKY transcription factor 1 | ||||
Refseq | XP_010557702.1 | 0.0 | PREDICTED: WRKY transcription factor 1 | ||||
Refseq | XP_010557703.1 | 0.0 | PREDICTED: WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 1e-150 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | E4MX10 | 1e-158 | E4MX10_EUTHA; mRNA, clone: RTFL01-10-D23 | ||||
TrEMBL | V4L010 | 1e-158 | V4L010_EUTSA; Uncharacterized protein | ||||
STRING | XP_010557699.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 1e-135 | zinc-dependent activator protein-1 |
Publications ? help Back to Top | |||
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