PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557686.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 1297aa    MW: 143681 Da    PI: 6.6342
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-0612761297426
                      ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                      ++C+ f+++G+Ck G++C+F H+
  XP_010557686.1 1276 RICK-FYESGYCKKGASCSFWHP 1297
                      79**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.2E-9109168IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579034.73E-7110165IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.689113179IPR019787Zinc finger, PHD-finger
SMARTSM002491.2E-6115161IPR001965Zinc finger, PHD-type
CDDcd155682.57E-19115160No hitNo description
PROSITE patternPS013590116176IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475921.31E-19328404IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.109.9E-23328410IPR003121SWIB/MDM2 domain
SMARTSM001510.0023329408IPR019835SWIB domain
PfamPF022012.8E-13333403IPR003121SWIB/MDM2 domain
PROSITE profilePS5136019.834462595IPR004343Plus-3 domain
SMARTSM007191.4E-43462572IPR004343Plus-3 domain
SuperFamilySSF1590421.96E-27463591IPR004343Plus-3 domain
PfamPF031263.1E-17467570IPR004343Plus-3 domain
SuperFamilySSF552771.16E-16725792IPR003169GYF domain
PROSITE profilePS5082915.309739793IPR003169GYF domain
CDDcd000722.00E-18739796No hitNo description
SMARTSM004441.5E-16740795IPR003169GYF domain
Gene3DG3DSA:3.30.1490.408.1E-18741793IPR003169GYF domain
PfamPF022133.1E-12741785IPR003169GYF domain
SuperFamilySSF902291.33E-512721296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.97612721297IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-412751297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-412761296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1297 aa     Download sequence    Send to blast
MDNHQQQLRQ GEPEQPALPR RDPTSVKGID LMRVDQCEEI GDTGVPSLAG APPTVAVVGG  60
LVDVSVEQEP RVVDGVASVK RRRGRPPKGQ AKMPPQPRPP PPPPPRRMED EEEDICFICF  120
DGGDLVLCDR RNCPKAYHPA CIKRDEAFFQ TKAKWNCGWH ICSTCQKASS YMCYTCTYSV  180
CKRCMRDADC VSVRGNMGLC AICMKIIMLI ENVAQGENET VKVDFDDKTS WEYLFKVYWL  240
CLKQKLSLTL DELTKATNPC KEVSCVAPKR ELQNELRDHS YNRAYSSDHN CVDVAVNGTK  300
RRRTSDPPNL LNKMNARDQD KLPGGSNWAT KELLEFVAYM KNGDTSVLSQ FDVQGLLLDY  360
IKSKNLRDPR QKSHVRCDLM LVRLFGKQRV GHFEMLKLLE SHFLIQENSS NAKTMNGEAT  420
HVVPLTMAKD SVQETMGIDR RRKTCKKVDD GVRNANKDEY AAIDVHNIHL IYLRRKFLEI  480
LLDDISKVHE KVVGTIVRIR VSGSDQKLDI HRLVQVVGTS KVTESYQIGK RTTDVMLGIL  540
NLDKREVISI DQLSNQDVTE DECKRLRQSI KCGLNKQLTV GEILEKAATL QTMRANEALE  600
AEILKLNYLR DRASENGHRK ELRECVEKLE LLKSPEEYQR RMLEIPEVHT DPSMNPCHAS  660
AEDSELGTRK QDNQLKTKSK SPQNKGDILS NLGNNAQEKL AAADLPSRNV CTAFYTDRDS  720
SSKVHNSSDI QETFQKEENE IWRYQDPTGK IQGPFSMAQL RRWKSSGHFP PYLRIWRTHE  780
KQDDSVLLTD ALAGRFNKAS FLSSAPLPSE ELKLAFDLGK SAGLDVNASS DKGDNNLLKN  840
SAANNTSTNS CSPSHVVHAA VNNQNETQAE GIIVSGIGKL ASGNALQHLP PQASCSQSSS  900
VILENTVAHE VREIPGSDLS NAVQTNGNHG PVKNTKDSMH AGSVYLQGSG HAPNLNQEIH  960
FLDFPSPTPK SSPEDLETQA AETIQSLSSC VLVKGPSGVT WAPSSVVVDG AHQLPQIPQQ  1020
NNDVMTAPAE NPVENIVVTQ NSDNTQVAHS SGWPAIVADP DECDESVSDL LAEVEAMEQN  1080
GLPSSPTSTF HCDDDDLTKG PEKDFFHPVA RMSLADQIDT QNVAGERSSP ASDLKESSKT  1140
MDELPQVIGP ELPLFAPPPP PPPSASIGHD LNLKTTALRL GSEATAEADT VEKSGNGSGR  1200
GNTERSPWGE GQQQQRYGGG ERERSTMGHR ERQWWNNGSS ATSHSHTNNR QWPYSSRHGH  1260
SQSASYAAAR PPKGLRICKF YESGYCKKGA SCSFWHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A6e-141051821081Histone-lysine N-methyltransferase NSD3
4gnd_C6e-141051821081Histone-lysine N-methyltransferase NSD3
4gne_A6e-141051821081Histone-lysine N-methyltransferase NSD3
4gnf_A6e-141051821081Histone-lysine N-methyltransferase NSD3
4gng_A6e-141051821081Histone-lysine N-methyltransferase NSD3
4gng_D6e-141051821081Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557686.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557686.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X1
RefseqXP_019056731.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLV4NGU00.0V4NGU0_EUTSA; Uncharacterized protein
STRINGXP_010557686.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding