 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_010557594.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
| Family |
C3H |
| Protein Properties |
Length: 315aa MW: 35195.7 Da PI: 7.9271 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010557594.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 29.4 | 1.4e-09 | 21 | 45 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+ C +f+ G C+ G++C+FaHg
XP_010557594.1 21 YKTRMCARFRV-GACRNGETCNFAHG 45
9**********.*************8 PP
|
| 2 | zf-CCCH | 44.3 | 3e-14 | 205 | 231 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f tG+C++Gd+C+FaHg+
XP_010557594.1 205 WKTRLCMKFEITGQCPFGDKCHFAHGQ 231
8************************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 3.66E-8 | 18 | 51 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.3E-14 | 18 | 53 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0011 | 20 | 46 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.54 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.4E-6 | 21 | 45 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.868 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.17 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.11E-6 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-6 | 103 | 126 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.71E-10 | 203 | 235 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-7 | 204 | 231 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.507 | 204 | 232 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.2E-15 | 204 | 235 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.2E-12 | 205 | 231 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MNSRAPMTPP VNRGGTSNIF YKTRMCARFR VGACRNGETC NFAHGIEDLR QPPSNWQELV 60
GATTSEERER ERERERERER PTSSVVVRNM SNWDEDQKII QRMKLCRKFC CGEECPYGDR 120
CNFLHEDLAK YREDTSKLRE SSAISISIGN GGSDPLAGNV SSSSSQIEAN RHVGPMPLPV 180
PPVPLCNPNP ILNSNLNSNC KTVYWKTRLC MKFEITGQCP FGDKCHFAHG QAELNSALGR 240
VEAEAMNVVT FAGNDASAMK AATVQVTSAS SSPNEEPERK KCLFKWNDPK KINRIYADWI 300
DDLPVGQTAA KQVES
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 69 | 79 | RERERERERER |
