PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557445.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 574aa    MW: 63595.5 Da    PI: 6.9944
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557445.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-093483851954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp   +++ LAk++gLt +qV++WF N R +
  XP_010557445.1 348 FEHflHPYPRDLDKQLLAKQTGLTRSQVSNWFINARVR 385
                     554459******************************88 PP
2BELL107.49e-35209280272
            BELL   2 rqelqkkkakLlsllee.VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     rqelq+kkakL+s++ee V++rY+qy+eq+q ++ sFe++ag g+ak+YtslAl+++S++FrcLkdai+ qi
  XP_010557445.1 209 RQELQMKKAKLVSMVEEqVEHRYRQYREQMQRIVTSFEQAAGFGAAKSYTSLALQTVSKQFRCLKDAICLQI 280
                     79************9744***************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.8E-47141278IPR006563POX domain
PfamPF075261.7E-39155276IPR006563POX domain
PROSITE profilePS5007112.066326389IPR001356Homeobox domain
CDDcd000861.13E-12329390No hitNo description
SMARTSM003896.5E-9329393IPR001356Homeobox domain
SuperFamilySSF466899.41E-17330396IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27332395IPR009057Homeodomain-like
PfamPF059204.8E-17346385IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MASFFHGGSE AREASSSSSD LTLQNQYSLL MMNPLGHALL HAPPSLSVVP TTVDMPTCTP  60
HLHHTINNNF CFSSPAVDSN AEPTCDIINP GPCGSHGPEL LSLPANAGSC KKLSLSLSSL  120
QPQTTIDHVE QGNSPVSTVT NGVVFRGGAG SFDPKYLRAA QELLDEIVSV GNANKSDCVV  180
SKGKLKVKTE FSGDVFSGGY GRELTAAYRQ ELQMKKAKLV SMVEEQVEHR YRQYREQMQR  240
IVTSFEQAAG FGAAKSYTSL ALQTVSKQFR CLKDAICLQI KIISKCLGEE YSVLGGKGEL  300
FRAPRTAGQG QFRHVGIMPH LHHHHSNAWR PQRGLPERAV SILRSWLFEH FLHPYPRDLD  360
KQLLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYLEEMK GQEITKDDNL SEEEDDELER  420
SRQQPPSNVQ LDILPDRPNL FDNNNNVSDQ CSSSMVSTNC LAADSRQGIF SLHKKRNQQS  480
DHEVVEASNL ICFNNGGFEN PYYHQAKVMN GNGVSLSLGL PHSRDQTFSN VQFGTGHQIE  540
FSGISRPPST YRNIDDSKTF VANAAAPLLP DFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-16335393563Homeobox protein Meis2
4xrm_B3e-16335393563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557445.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557445.10.0PREDICTED: BEL1-like homeodomain protein 5 isoform X1
SwissprotQ8S8971e-115BLH5_ARATH; BEL1-like homeodomain protein 5
STRINGXP_010557445.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.11e-116BEL1-like homeodomain 5