PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NF-YB | ||||||||
Protein Properties | Length: 172aa MW: 19218.2 Da PI: 4.6458 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 47.7 | 3.8e-15 | 9 | 102 | 6 | 94 |
NF-YB 6 rflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++lP a v r+mk l + + i k+a e + fi ++++ a+d c++ kr+t+n++d+l al ++ f ++veplk+ l+++++ + XP_010557419.1 9 EELPRAIVRRVMKDKLSEcspdyDVSIHKEALLAFAESARVFIHYLSATANDLCKESKRQTMNANDVLKALEEIDFPEFVEPLKTSLEEFKQKN 102 579**********999652222356899************************************************************999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.7E-33 | 7 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-10 | 10 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.86E-25 | 11 | 127 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MESEKVVAEE LPRAIVRRVM KDKLSECSPD YDVSIHKEAL LAFAESARVF IHYLSATAND 60 LCKESKRQTM NANDVLKALE EIDFPEFVEP LKTSLEEFKQ KNAGKKSGGG GGSKPKETKK 120 RKQEESSLQN GRRKSKPGKE KEENDDHNMD ENGNEDGDNI SGEEEDGDEA EA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557419.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557419.1 | 1e-122 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A087GRQ9 | 8e-63 | A0A087GRQ9_ARAAL; Uncharacterized protein | ||||
TrEMBL | A0A178VZ11 | 4e-62 | A0A178VZ11_ARATH; NF-YB11 | ||||
TrEMBL | D7LHL1 | 2e-62 | D7LHL1_ARALL; Uncharacterized protein | ||||
STRING | XP_010557419.1 | 1e-122 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12007 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-55 | nuclear factor Y, subunit B11 |