PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557413.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 491aa MW: 54446.2 Da PI: 9.124

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.7e-10	185	226	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_010557413.1 185 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQEL 226 6889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.6E-7	182	275	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	184	228	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.8E-8	185	229	No hit	No description
Pfam	PF00170	1.7E-7	185	226	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-7	186	228	No hit	No description
PROSITE pattern	PS00036	0	189	204	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-29	268	342	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MANHRISDAT NHHQLPYSLL HGLSNPPPGF SNQEGSTTFD FGELEEAIVL QGVKFRNDEA 60 KPRGDSGRGA AATTLEMFPS WPMRAHQTPP RGNSKSRGES TDSGSANFSG SQQTESPMSS 120 KKPSHGISPE LRRNNLMLNN SNNNTTNVSD ASRTGLASTS QTPAPPPRTA DDKRKATTSG 180 KQLDAKTLRR LAQNREAARK SRLRKKAYVQ QLESSRIKLT QLEQELQRAR SQGLLLGGGC 240 GPAGPGITPG AAIFDMEYGR WLEEENRHMS EIRTGVQAHL SDSDLRVTVD GYIAHFDELF 300 RLKAAAAKSD VFHLVTGTWM SPAERCFIWI AGFRPSDLIK MVVGQMELVT EQQMMGIYSL 360 QHSSQQAEEA LSQGLEQLQH SLIDHISSLP LLDDFHQMAL AIAKLSNLEG FVRQADNLRQ 420 QTIHQLRRIL TVRQAARCFL IIGEYYGRLR ALSSLWLSRP REGLISDEAA SCQTTTDLQM 480 VQSSRNHFSN F

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MANHRISDAT NHHQLPYSLL HGLSNPPPGF SNQEGSTTFD FGELEEAIVL QGVKFRNDEA  60
KPRGDSGRGA AATTLEMFPS WPMRAHQTPP RGNSKSRGES TDSGSANFSG SQQTESPMSS  120
KKPSHGISPE LRRNNLMLNN SNNNTTNVSD ASRTGLASTS QTPAPPPRTA DDKRKATTSG  180
KQLDAKTLRR LAQNREAARK SRLRKKAYVQ QLESSRIKLT QLEQELQRAR SQGLLLGGGC  240
GPAGPGITPG AAIFDMEYGR WLEEENRHMS EIRTGVQAHL SDSDLRVTVD GYIAHFDELF  300
RLKAAAAKSD VFHLVTGTWM SPAERCFIWI AGFRPSDLIK MVVGQMELVT EQQMMGIYSL  360
QHSSQQAEEA LSQGLEQLQH SLIDHISSLP LLDDFHQMAL AIAKLSNLEG FVRQADNLRQ  420
QTIHQLRRIL TVRQAARCFL IIGEYYGRLR ALSSLWLSRP REGLISDEAA SCQTTTDLQM  480
VQSSRNHFSN F

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557413.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557413.1	0.0	PREDICTED: transcription factor TGA2.2 isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1J3D5K8	0.0	A0A1J3D5K8_NOCCA; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRING	XP_010557409.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]