PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557339.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 219aa    MW: 24787 Da    PI: 6.7035
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like40.56.1e-132650125
         G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                    kprlrWt eLHerFv+av+qLGG++
  XP_010557339.1 26 KPRLRWTAELHERFVDAVSQLGGPD 50
                    79*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-112352IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-72650IPR006447Myb domain, plants
PfamPF143799.7E-11103139IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MMGMMNESRG MCVDGDSGLV LTTDPKPRLR WTAELHERFV DAVSQLGGPD ITKLVHVLDS  60
QKFRLGKQPH REHSIKDTNR ASMLDLQRNT VFSPGIISHN TSEMQMEVQR RIHEQIEVQV  120
QRHLHLRIEA QSMLEKACQT QATLKGGHQP LLFQYHHLNP YDANDGNKSS VLWVEEPSSS  180
QLLGSESVGK DIDSTLHLYD MKPNFSEDAP TTHRTPCLG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557339.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019059704.11e-116PREDICTED: myb family transcription factor PHL12
SwissprotQ8VYI24e-56PHLC_ARATH; Myb family transcription factor PHL12
SwissprotQ9SAK51e-54APL_ARATH; Myb family transcription factor APL
TrEMBLA0A178V5I91e-53A0A178V5I9_ARATH; Uncharacterized protein
TrEMBLA0A397YV041e-53A0A397YV04_BRACM; Uncharacterized protein (Fragment)
TrEMBLA0A3P6BBC52e-53A0A3P6BBC5_BRACM; Uncharacterized protein
STRINGXP_010557339.11e-164(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137451726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.12e-58G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]