PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557076.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 424aa MW: 46506.6 Da PI: 6.6379

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.7e-10	225	283	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l+ e+ XP_010557076.1 225 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTVEN 283 9********************************************99998887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-16	221	285	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.772	223	286	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-10	225	279	No hit	No description
SuperFamily	SSF57959	9.14E-11	225	276	No hit	No description
Pfam	PF00170	1.3E-8	225	277	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.47E-24	226	275	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MDKEKSPAPG GGLPPPSGGY SAFSPNGSSF GMKTESSFPP LVPSSSSDIG AFGHGSDSSR 60 FSHDISRMPD NPPKNLGHRR AHSEILTLPD DLSFDSDLGV VGGADGPSFS DETEEDLLFM 120 YLDMDKFNSS ATSSSQMGDP SEHAGRIEGT QTGSANLATS SNPETMLAGS SERPRIRHQH 180 SQSMDGSTTI KPEMLMSGAE EASPSDPKKA MSAAKLAELA LIDPKRAKRI WANRQSAARS 240 KERKMRYIAE LERKVQTLQT EATSLSAQLT LLQRDTNGLT VENNELKLRL QTMEQQVHLQ 300 DALNDALKEE IQHLKVLTGP VVPNGASMMN YGSYGSNQQL YHNNQSMHTL LAAQQFQQLQ 360 IHSQKQQQQQ QQQFQFQQQQ LHHLRQQEQQ SGFADLRRSM PSPSQKESGS SSDLKAPKMK 420 DKGI

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MDKEKSPAPG GGLPPPSGGY SAFSPNGSSF GMKTESSFPP LVPSSSSDIG AFGHGSDSSR  60
FSHDISRMPD NPPKNLGHRR AHSEILTLPD DLSFDSDLGV VGGADGPSFS DETEEDLLFM  120
YLDMDKFNSS ATSSSQMGDP SEHAGRIEGT QTGSANLATS SNPETMLAGS SERPRIRHQH  180
SQSMDGSTTI KPEMLMSGAE EASPSDPKKA MSAAKLAELA LIDPKRAKRI WANRQSAARS  240
KERKMRYIAE LERKVQTLQT EATSLSAQLT LLQRDTNGLT VENNELKLRL QTMEQQVHLQ  300
DALNDALKEE IQHLKVLTGP VVPNGASMMN YGSYGSNQQL YHNNQSMHTL LAAQQFQQLQ  360
IHSQKQQQQQ QQQFQFQQQQ LHHLRQQEQQ SGFADLRRSM PSPSQKESGS SSDLKAPKMK  420
DKGI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557076.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557077.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_010557078.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_010557079.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-175	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2P2M991	0.0	A0A2P2M991_RHIMU; Transcription factor RF2a
STRING	XP_010557076.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]