PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HB-other

Protein Properties

Length: 1696aa MW: 190457 Da PI: 5.3547

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010556848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.9e-19	19	75	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle+Le+ ++ ++yps+++r+eL++klgL++rq ++WF+ rR k++k XP_010556848.1 19 KSKRKMKTAAQLEVLEKTYAVESYPSEATRAELSDKLGLSDRQLQMWFCHRRLKDRK 75 679****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-18	5	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-17	12	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.054	16	76	IPR001356	Homeobox domain
SMART	SM00389	6.8E-18	18	80	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-16	19	75	IPR001356	Homeobox domain
CDD	cd00086	1.61E-14	19	77	No hit	No description
SMART	SM00571	9.9E-22	528	587	IPR018501	DDT domain
PROSITE profile	PS50827	16.521	528	587	IPR018501	DDT domain
Pfam	PF02791	3.0E-17	529	584	IPR018501	DDT domain
Pfam	PF05066	1.7E-14	712	779	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	9.4E-7	915	955	IPR028942	WHIM1 domain
Pfam	PF15613	9.0E-13	1088	1160	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1696 aa Download sequence Send to blast
MEGGDEADKN SIPEGGETKS KRKMKTAAQL EVLEKTYAVE SYPSEATRAE LSDKLGLSDR 60 QLQMWFCHRR LKDRKRQRKV STAMESKAAA NGNELTAAVE AGKEPTSFGN ELDTRRAVVR 120 SSMAVPRVGR WHNEPSPQMA AELRAIGFVE AQLGERLRED GPILGMEFDP LPPGAFGTPI 180 ETPSHPKPPG HSLESHFYER ADAKSVKDRV RPIREYQFLP EQPSSRVSPP HHSGVALDVS 240 VIRATSVPCG HLYSHRDENV PYGYGHSAQT PNLNLSTLHP KAGYAFSPSS GEYDSVHRKN 300 YTDATAHDNF DDHPIHTVGN PFVLSERNAG NDDDVMRMER KRRNEEARIA REVEVHEKKV 360 RKELERQDML RRKREEQIRK EMERQDRERR KEEERLLRER QREEEKYLKE QRRELLRREK 420 FLIKETIRAE KMRQKEELRR EKEAARLRAA NERAIARKIA KESMELLEDE RLELMELAAS 480 SKGLPSTLAL DFETLQNLDT YRDKQTAFPP TSLKLKKPFA IKPWNGSEEN VGNLLMVWRF 540 LITFADVLGL WPCTLDEFAQ AFHDHDPRLL GEVHIVLLRM IVKDIEDVAR ATSVGLGANQ 600 NAAAATNPGG GHPHIVDGAY AWGFDIRCWK RHLNTLTWPE ILRQLSLSAG FGSQLKKKNI 660 GQPFTHEENE VNESENVISS LRNGVAAEDA FAKMQERGFS NSRRSQHRLT PGTVKFAAFH 720 ILSFEGENGL NILEVAEKIQ ISGLRDLTTS KTPEASIAAA LSRDMKLFER VAPSTYCVRA 780 PYRKDNGDAE AILAEARERI RIFKSGTTDV EDVDEAAGKD EDSESDVGDD PEVDDLGMVD 840 LTPKVEGLDA RVMENSTNRK PIFENGKLSD EVVKTESELS LSRFHSEDVK EERKESSLVE 900 QYEEDDCFDE SKLGESWVEA LVEGEYSELS VEERLNALVS LIGVAIEGNT IRVSLEERLE 960 STSALKKQMW AEVQLDKRRI KEEFVIRTSY PLYLGTKREP NITIPSSEER ESPLTNDMHL 1020 DQIRLHESSS FSRNDRCDMN DTPVGTGNPT GVDNFQYQNQ GYVADKERMR AQLKAYVGYK 1080 AEELYMYRSL PLGQDRRRNR YWRFTASASR SDPGCSRIFV ELRDSRWRII DSEEGFDSLV 1140 KCLDVRGVRE SHLHFMLRKI EVSFKESVGR NVCKTSEVTC SYLNSPSGNS CGSGLDSDTA 1200 EISTTFNIES GSNPIERQNV LQRYRDFEKW MWVNMLCSDT LVSAFKNGAG KSRTLLCICG 1260 SCGEVYLAEG LHCPGCGQAC CSDTSGLCFA EQVARLGDNF TGESDSFLGG SVSSPPRIRL 1320 IKMQLSLVES SLPSEGLGAI WMENLRKSWA LKLISSKSPE DLLQVLTTLE SALRRDYLSS 1380 DFETTSELLG FSEAEHEARA AAGTSDPSVL PWIPKTTAAI ALRLFELNGS IACTAIQKTD 1440 AHKDKKSEDF IVSEGNVLRN DARNETPSRP VYAQDENWAE PSLGFAGSGR GGRPRGRGRP 1500 RSRGGKSERK AKTGGRRALA NSNCEGLEPY PRTEAQSRVP AGRKRGRRSA RSCKRPTKGA 1560 LGISNNGERH KDEGLSILPA VQDEDGWNEP PELPKEEASS SGRSFRYNYE DNDGITAEVD 1620 DLEGGDSSKL AGRGEFNLRS DEEEDDMNGD DGDEFRNEDS DGEEPADAYE KNSDGRKMVP 1680 YEDPDLTSSS SSGFID

Sequence ? help Back to Top

Protein Sequence Length: 1696 aa Download sequence Send to blast

MEGGDEADKN SIPEGGETKS KRKMKTAAQL EVLEKTYAVE SYPSEATRAE LSDKLGLSDR  60
QLQMWFCHRR LKDRKRQRKV STAMESKAAA NGNELTAAVE AGKEPTSFGN ELDTRRAVVR  120
SSMAVPRVGR WHNEPSPQMA AELRAIGFVE AQLGERLRED GPILGMEFDP LPPGAFGTPI  180
ETPSHPKPPG HSLESHFYER ADAKSVKDRV RPIREYQFLP EQPSSRVSPP HHSGVALDVS  240
VIRATSVPCG HLYSHRDENV PYGYGHSAQT PNLNLSTLHP KAGYAFSPSS GEYDSVHRKN  300
YTDATAHDNF DDHPIHTVGN PFVLSERNAG NDDDVMRMER KRRNEEARIA REVEVHEKKV  360
RKELERQDML RRKREEQIRK EMERQDRERR KEEERLLRER QREEEKYLKE QRRELLRREK  420
FLIKETIRAE KMRQKEELRR EKEAARLRAA NERAIARKIA KESMELLEDE RLELMELAAS  480
SKGLPSTLAL DFETLQNLDT YRDKQTAFPP TSLKLKKPFA IKPWNGSEEN VGNLLMVWRF  540
LITFADVLGL WPCTLDEFAQ AFHDHDPRLL GEVHIVLLRM IVKDIEDVAR ATSVGLGANQ  600
NAAAATNPGG GHPHIVDGAY AWGFDIRCWK RHLNTLTWPE ILRQLSLSAG FGSQLKKKNI  660
GQPFTHEENE VNESENVISS LRNGVAAEDA FAKMQERGFS NSRRSQHRLT PGTVKFAAFH  720
ILSFEGENGL NILEVAEKIQ ISGLRDLTTS KTPEASIAAA LSRDMKLFER VAPSTYCVRA  780
PYRKDNGDAE AILAEARERI RIFKSGTTDV EDVDEAAGKD EDSESDVGDD PEVDDLGMVD  840
LTPKVEGLDA RVMENSTNRK PIFENGKLSD EVVKTESELS LSRFHSEDVK EERKESSLVE  900
QYEEDDCFDE SKLGESWVEA LVEGEYSELS VEERLNALVS LIGVAIEGNT IRVSLEERLE  960
STSALKKQMW AEVQLDKRRI KEEFVIRTSY PLYLGTKREP NITIPSSEER ESPLTNDMHL  1020
DQIRLHESSS FSRNDRCDMN DTPVGTGNPT GVDNFQYQNQ GYVADKERMR AQLKAYVGYK  1080
AEELYMYRSL PLGQDRRRNR YWRFTASASR SDPGCSRIFV ELRDSRWRII DSEEGFDSLV  1140
KCLDVRGVRE SHLHFMLRKI EVSFKESVGR NVCKTSEVTC SYLNSPSGNS CGSGLDSDTA  1200
EISTTFNIES GSNPIERQNV LQRYRDFEKW MWVNMLCSDT LVSAFKNGAG KSRTLLCICG  1260
SCGEVYLAEG LHCPGCGQAC CSDTSGLCFA EQVARLGDNF TGESDSFLGG SVSSPPRIRL  1320
IKMQLSLVES SLPSEGLGAI WMENLRKSWA LKLISSKSPE DLLQVLTTLE SALRRDYLSS  1380
DFETTSELLG FSEAEHEARA AAGTSDPSVL PWIPKTTAAI ALRLFELNGS IACTAIQKTD  1440
AHKDKKSEDF IVSEGNVLRN DARNETPSRP VYAQDENWAE PSLGFAGSGR GGRPRGRGRP  1500
RSRGGKSERK AKTGGRRALA NSNCEGLEPY PRTEAQSRVP AGRKRGRRSA RSCKRPTKGA  1560
LGISNNGERH KDEGLSILPA VQDEDGWNEP PELPKEEASS SGRSFRYNYE DNDGITAEVD  1620
DLEGGDSSKL AGRGEFNLRS DEEEDDMNGD DGDEFRNEDS DGEEPADAYE KNSDGRKMVP  1680
YEDPDLTSSS SSGFID

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	79	RLKDRKRQRKV
2	1492	1502	RPRGRGRPRSR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010556848.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010556848.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2-like isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A178UEB6	0.0	A0A178UEB6_ARATH; RLT2
STRING	XP_010556848.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator