PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010556843.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C3H

Protein Properties

Length: 399aa MW: 43662.8 Da PI: 8.0475

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010556843.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.9	5.3e-11	124	147	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+ ++r+G C++Gd C+FaHg XP_010556843.1 124 GEVCPEYRRGGDCSRGDDCSFAHG 147 689********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.53E-6	120	151	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.0E-6	121	148	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.695	121	149	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.0E-7	122	149	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-8	125	147	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5	157	180	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.35	163	178	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010187	Biological Process	negative regulation of seed germination
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MEAICTEQHR SGHVRRPTVE IPPRKLLLSA KTAAASPGRE HKLNWNKTNK IPTTDHDSHS 60 DNDSREYCYD SDSDDPYAAD HFRMYEFKIR RCTRSRSHDW TDCPFAHPGE KARRRDPRRY 120 SYSGEVCPEY RRGGDCSRGD DCSFAHGVFE CWLHPSRYRT EACKDGKHCK RKVCFFAHSP 180 RQLRVLPPED VSAGSCGDAS MTSAVSLSPA SVLSGGKNRC CLFCHHGVGS PTSPLLGLSH 240 LTRSPSVSPP LSPAKKTAVL SRLRSQLGSA AYKDVLSELM SSLDSMTLAE VLAGSSSPVT 300 TPVATSSALI SAGTTNHRVP WLDVGFGGER DIQQQQQSHL QFAFSPSSPS FLNSPKPANL 360 FSDDSSPHGG LRDRPMAASA AFEDGCGVPD LGWVNDLLT

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MEAICTEQHR SGHVRRPTVE IPPRKLLLSA KTAAASPGRE HKLNWNKTNK IPTTDHDSHS  60
DNDSREYCYD SDSDDPYAAD HFRMYEFKIR RCTRSRSHDW TDCPFAHPGE KARRRDPRRY  120
SYSGEVCPEY RRGGDCSRGD DCSFAHGVFE CWLHPSRYRT EACKDGKHCK RKVCFFAHSP  180
RQLRVLPPED VSAGSCGDAS MTSAVSLSPA SVLSGGKNRC CLFCHHGVGS PTSPLLGLSH  240
LTRSPSVSPP LSPAKKTAVL SRLRSQLGSA AYKDVLSELM SSLDSMTLAE VLAGSSSPVT  300
TPVATSSALI SAGTTNHRVP WLDVGFGGER DIQQQQQSHL QFAFSPSSPS FLNSPKPANL  360
FSDDSSPHGG LRDRPMAASA AFEDGCGVPD LGWVNDLLT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010556843.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010556843.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 2
Swissprot	Q9ZWA1	1e-145	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A178W4T9	1e-143	A0A178W4T9_ARATH; TZF4
STRING	XP_010556843.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2987	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	1e-111	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]