PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556771.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 396aa    MW: 43251.3 Da    PI: 9.3945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-0578100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_010556771.1  78 FVCEICKKGFQRDQNLQLHRRGH 100
                     89*******************88 PP
2zf-C2H2120.00062154176123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H + +
  XP_010556771.1 154 WKCDKCSKIYAVQSDWKAHTKIC 176
                     58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.47E-677100No hitNo description
PROSITE profilePS5015710.63778100IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-578123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03978100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355280119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.47E-6149174No hitNo description
SMARTSM00355170154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAMFPSCTVS HKFCSLSEEA SASSGNRVVQ GFGGLNNVVS SFSAPQKPKK RRSLPGNPDP  60
DAEVIALSPK TLLATNRFVC EICKKGFQRD QNLQLHRRGH NLPWKLKQRN SKDTKKKAYV  120
CPEPSCVHHH PSRALGDLTG IKKHYCRKHG EKKWKCDKCS KIYAVQSDWK AHTKICGTRE  180
YRCDCGTLFS RKDSFITHRA FCDALAEESA RILSCASSSM SHLANPNPNS IIPLQNQSFI  240
LQDNDMVKPS SSSSPFMVKS PHLDPLAATS SSSAALSATA LLQRAVALGA VVGGGGQTQS  300
VGHHQNHHMT ANEILGVNRX MTSQVTCWEX GQLLGGFGAT WQKAXRLTRD FLGLTGHNHH  360
GISRTDDSNL AHVSMSAEDA LEYAGGVQFS LPFGNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35150227372Zinc finger protein JACKDAW
5b3h_F8e-35150227372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556771.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556771.20.0PREDICTED: protein indeterminate-domain 12 isoform X1
SwissprotO227591e-165IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A178V4W81e-163A0A178V4W8_ARATH; Indeterminate(ID)-domain 12
TrEMBLA0A384KUL21e-163A0A384KUL2_ARATH; IDD12
STRINGXP_010556771.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-145indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]