PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556765.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 313aa    MW: 33134.8 Da    PI: 6.679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-08157201554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L e++P+ +      K + a++  + v+Y+k L
  XP_010556765.1 157 HSIAERLRRERIAERIRALHEIVPTvN------KTDRAAMIDEIVDYVKFL 201
                     99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-14150211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.161152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-13154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-5157201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-8158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MASGNPHGAP SDQPPSDDFF EQILGLPNFA APSAAGLPGA NIGLDGPPPP MMLQLGSGDK  60
ASHMAALGGG GAGGFHGQMF PLGLSLDQGK GPGFLKHDEP HGSGRRFPDE IVDNRCPSMK  120
PVFHGQPMPQ PALTAPHPPS AIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALHEIVP  180
TVNKTDRAAM IDEIVDYVKF LRLQVKVLSM SRLGGAGAVA PLVTDMPLPL SSSVEDEGIE  240
GGRTEPAWEK LSKDGTEGQV AKLMEENVGA AMQFLQSKSL CIMPISLAMA VCHSQSQPSD  300
TSSGVKPEMN PPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556765.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556765.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-154UNE12_ARATH; Transcription factor UNE12
TrEMBLE4MW681e-158E4MW68_EUTHA; mRNA, clone: RTFL01-02-G01
STRINGXP_010556765.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-150bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]