PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556669.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 326aa    MW: 36731.1 Da    PI: 6.4307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11177218955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +rRR++iN+++  L+ l+P++      K++Ka+ L +A+eY k+Lq
  XP_010556669.1 177 KKRRRAEINQKLRLLQNLIPNC-----DKVDKASALDMAIEYTKNLQ 218
                     59*******************9.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.61E-10165222No hitNo description
PROSITE profilePS5088813.275168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14171232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-7173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8178218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-13178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009642Biological Processresponse to light intensity
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003712Molecular Functiontranscription cofactor activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MFGQDFMALH DLQLSEMIKL GSNEKMAETP SDCYNYKQGG HMNEDMMTVL CEEFQTDPQI  60
VPQLDDCTNM VFDQEVVAES LHHGSAMMAM KGLHQGHEVS MKAAEVLVPD QHSEAGGDCR  120
RAPPRTKHDN SRRCTCTSSD ESVDDEESSD GFTREVPWVT SKGSKRKRIM EARDDKKKRR  180
RAEINQKLRL LQNLIPNCDK VDKASALDMA IEYTKNLQLQ LQVMSMGIRV YKPPVININA  240
CTHIPYFSPM AMSFGHCSIP VNPVAVPLIT PFNSPLSPLL QQLPKQALLS PTASTSFPSL  300
LGLVPSSFHE FYPTCNKELY DRFRFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165180RKRIMEARDDKKKRRR
2175180KKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556669.10.0PREDICTED: transcription factor HFR1-like isoform X1
STRINGXP_010556669.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140151624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02340.17e-22bHLH family protein