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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010556492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 31878 Da PI: 10.672 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 20 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ XP_010556492.1 20 RGHWRPSEDSKLRELVAVHGPQNWNFIAERMQ-GRTGKSCRLRWFNQ 65 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.7e-15 | 73 | 116 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eE+e+l+ +++ +G++ W+ I+r + gRt++ +k++w+ + XP_010556492.1 73 RPFSEEEEEKLLAVHRAFGNK-WAMISRLFH-GRTDNAVKNHWHVL 116 68*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.072 | 15 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-14 | 19 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-17 | 20 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.99E-28 | 20 | 113 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-26 | 21 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.97E-12 | 23 | 64 | No hit | No description |
PROSITE profile | PS51294 | 18.537 | 71 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-12 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-12 | 72 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-8 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-20 | 74 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MSEMEETCNK NQRRSRVCTR GHWRPSEDSK LRELVAVHGP QNWNFIAERM QGRTGKSCRL 60 RWFNQLDPRI SKRPFSEEEE EKLLAVHRAF GNKWAMISRL FHGRTDNAVK NHWHVLMARK 120 FRQQSESYKR ELNQSAHNKP EAGKRLSTTL ETTQVNPQGL GLSNGNGSDE SKNVKKNSWN 180 KLKREKNNLR AQYLQKGYRL SKTMQDPSLR HHFSTFPANS DSFLALKPVS IPIPIPEPPP 240 PSSSSSVSST VSAAETTMVT GYLETTTPPT FIDFLGVGAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 19 | 121 | 6 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010556492.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010556492.2 | 0.0 | PREDICTED: trichome differentiation protein GL1 | ||||
TrEMBL | V4K4Z8 | 6e-98 | V4K4Z8_EUTSA; Uncharacterized protein | ||||
STRING | XP_010556492.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6300 | 18 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.2 | 1e-96 | myb domain protein 110 |