PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556419.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 361aa    MW: 38727.9 Da    PI: 10.2566
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30289346359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+H h 
  XP_010556419.1 289 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPMMLIVTYEGDHSHA 346
                     99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-18240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-32276346IPR003657WRKY domain
PROSITE profilePS5081129.976282348IPR003657WRKY domain
SuperFamilySSF1182905.49E-26285346IPR003657WRKY domain
SMARTSM007741.1E-36287347IPR003657WRKY domain
PfamPF031064.7E-26289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVVFGDMAVE LMMSYGGGRR SDGGDRFPAT SSAGKIEETA LREATTAGIQ GVEEFLKFIG  60
QSQPRDQKQP ELTAVTDVAV NSFKKVISLL GRSRTGHARF RRAPVAPPPQ QQRPSVSFKG  120
FNNLKTEPKT EHVVGGGSAF RVYCPTPVHR LPPLPHSKSN NGIVGGPSSS SQPSLNEGPS  180
TTINFAPSPP ISAANSFMSS LTGDSDSIQM SMSSSGFQFT NPSHVSGSCG KPPLSSSSLK  240
RRCSSLDEAA LKCGSSSGRC HCSKKRKSRV KRVIRVPAIS SKMADIPPDD YSWRKYGQKP  300
IKGSPHPRGY YKCSSVRGCP ARKHVERALD DPMMLIVTYE GDHSHALIVS DASTAMVLES  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21275347273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556419.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019059556.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-153WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLR0H0E11e-154R0H0E1_9BRAS; Uncharacterized protein
STRINGXP_010556419.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-106WRKY DNA-binding protein 7