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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_010556384.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family |
RAV |
Protein Properties |
Length: 355aa MW: 39843.6 Da PI: 9.691 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_010556384.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 42 | 2.4e-13 | 60 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g
XP_010556384.1 60 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFSEEDEAARAYDVAAQRFRG 108
89****9888.8*********3.....5**********99*************98 PP
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2 | B3 | 98.4 | 4.4e-31 | 192 | 292 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
f+k+ tpsdv+k++rlv+pk+ ae+h +++++++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++++ +++
XP_010556384.1 192 FEKTVTPSDVGKLNRLVIPKHQAEKHfplpsCNVSAKGVLLNFEDITGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLRAGDVVGFSRSNGHDQ 286
99***************************995667899**************************************************8877888 PP
..EEEE CS
B3 91 elvvkv 96
+l++++
XP_010556384.1 287 QLYIGW 292
788776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MDVNSVDEST TSTETVCTPP ATRSPARKSP ERFCRVGSGL SVVLDSENGV EFESRKLPSS 60 KYKGVVPQPN GRWGAQIYEK HQRVWLGTFS EEDEAARAYD VAAQRFRGRD AITNFKNARL 120 DDAEVEFLNA HSKSEIVDML RKHTYNEELE QNKRRLRSRY GNDERNENVK TRSGDGNDGV 180 SGKEFRPAEA LFEKTVTPSD VGKLNRLVIP KHQAEKHFPL PSCNVSAKGV LLNFEDITGK 240 VWRFRYSYWN SSQSYVLTKG WSRFVKEKRL RAGDVVGFSR SNGHDQQLYI GWKAISGSGS 300 DKEPGRVVRL FGVNISKGDC LNDAVANGGG DKRVREAEEM ISLGCSKRQR ILVAS
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Functional Description ? help
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Source |
Description |
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Publications
? help Back to Top |
- Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] - Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering. Plant Sci., 2015. 241: p. 78-95 [PMID:26706061] - Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] - Zhao Y, et al.
ABA receptor PYL9 promotes drought resistance and leaf senescence. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54 [PMID:26831097]
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