PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555714.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 380aa    MW: 42114.3 Da    PI: 6.1986
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555714.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19124173255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + +GVr+++ +g+W+AeIrdp +   r+r++lg+f+taeeAa  +++a+ +l+g
  XP_010555714.1 124 KLRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFDTAEEAAMVYDNAAIQLRG 173
                     679******.**********743...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-36124187IPR001471AP2/ERF domain
CDDcd000185.92E-33124180No hitNo description
SuperFamilySSF541712.22E-21124181IPR016177DNA-binding domain
PROSITE profilePS5103223.235124181IPR001471AP2/ERF domain
PfamPF008476.1E-13124173IPR001471AP2/ERF domain
PRINTSPR003676.8E-10125136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-29125180IPR001471AP2/ERF domain
PRINTSPR003676.8E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MRFFKKKVVK VTAMMMEMAD CTDAKCTEHR TVTTKYVKQS QEKLAGAGGV RSESRMVRVS  60
VTDLDATDSS SDDEEPLHPR RRVKRFVKEI RVEPDRIGNA VSLPVKRRRS LAAEVAGSAG  120
GGRKLRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFDTAEEA AMVYDNAAIQ LRGSDAVTNF  180
ILPPTRRRDK ASELVPVVSV PEKPETNTSP SSSEPSDVPD RFPFPSSVLD FGHNQITKPA  240
SKPVTSTQLA EEPEQITEPV RSTYSAKDPE QITKPVKPEL SESPCYQPGN SISIDSDDSL  300
PLDTSYLDKL FNESSDISTF YQPISAANDF FADILNDGIT RIGGSHRLPQ FNSGGGINYF  360
DFSFKDLEDL LIMPQAVGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19122182364ATERF1
3gcc_A1e-19122182364ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555714.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555714.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
STRINGXP_010555714.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-50cytokinin response factor 4