PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010555672.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 603aa MW: 66863.2 Da PI: 8.1262

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010555672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H XP_010555672.1 76 KCQKCSREFCSPVNYRRHNRLH 97 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.806	75	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MPLAKSNPSN SMELVKQDGN DSLDMLIRRA VGRESFLTFP RPENNPVQLF QLLNAFDQPE 60 LPGWPLLTPL KVQMQKCQKC SREFCSPVNY RRHNRLHRCS RRPDKDYGRD RNILGAFWDK 120 LSIDEAKGIA SLKGMMLEEV SGPSVETALM TLIQKPGFTA LPQYYLRAGS DLLDIIQARQ 180 SRFPISSQEL FNILDDASEK TFLCGAAASM QKYIFDGETG KNALEAKNVA ACTSFLLEQK 240 LIEAWLADKD AESLRCQKLL VEEEEAAQRR QAELLERKRK KKLRQQEQRV KEQRTEQKED 300 AKESESTTSE EQEDPAEPSS PLSVVSDSEA QRPDAIPGED SSSLEGSEAL ETNGGANCET 360 QAMISSGACD DGLGNGHNME RRGGQRQMGP FRRLLPSKSQ REMPNGFHSN PVSHIPKPGG 420 MLKNGTNRDA RVSAAANTTK VWSRKADNPR SISQDAAVTL SGQTRNSKVL IGSICVTLGN 480 DGPCGGHDQT DCGEEDERTK NIQAKPPSKQ STVKIWRPVS RHGTKASKQV ENTDKELEPN 540 MILRRSNKGK SATPGEDKIT KAHAAHHGSL QFNSREAKAF LAQRWKEATL AEHVTLVVSQ 600 QGC

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MPLAKSNPSN SMELVKQDGN DSLDMLIRRA VGRESFLTFP RPENNPVQLF QLLNAFDQPE  60
LPGWPLLTPL KVQMQKCQKC SREFCSPVNY RRHNRLHRCS RRPDKDYGRD RNILGAFWDK  120
LSIDEAKGIA SLKGMMLEEV SGPSVETALM TLIQKPGFTA LPQYYLRAGS DLLDIIQARQ  180
SRFPISSQEL FNILDDASEK TFLCGAAASM QKYIFDGETG KNALEAKNVA ACTSFLLEQK  240
LIEAWLADKD AESLRCQKLL VEEEEAAQRR QAELLERKRK KKLRQQEQRV KEQRTEQKED  300
AKESESTTSE EQEDPAEPSS PLSVVSDSEA QRPDAIPGED SSSLEGSEAL ETNGGANCET  360
QAMISSGACD DGLGNGHNME RRGGQRQMGP FRRLLPSKSQ REMPNGFHSN PVSHIPKPGG  420
MLKNGTNRDA RVSAAANTTK VWSRKADNPR SISQDAAVTL SGQTRNSKVL IGSICVTLGN  480
DGPCGGHDQT DCGEEDERTK NIQAKPPSKQ STVKIWRPVS RHGTKASKQV ENTDKELEPN  540
MILRRSNKGK SATPGEDKIT KAHAAHHGSL QFNSREAKAF LAQRWKEATL AEHVTLVVSQ  600
QGC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	ERKRKKKL
2	276	280	RKRKK
3	280	290	KKLRQQEQRVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010555672.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010555670.1	0.0	PREDICTED: uncharacterized protein LOC104825103
Refseq	XP_010555671.1	0.0	PREDICTED: uncharacterized protein LOC104825103
Refseq	XP_010555672.1	0.0	PREDICTED: uncharacterized protein LOC104825103
Refseq	XP_010555673.1	0.0	PREDICTED: uncharacterized protein LOC104825103
TrEMBL	A0A384LH20	0.0	A0A384LH20_ARATH; Uncharacterized protein
TrEMBL	Q8RXF0	0.0	Q8RXF0_ARATH; C2H2-like zinc finger protein
STRING	XP_010555670.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	0.0	C2H2-like zinc finger protein