PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010555671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 603aa MW: 66863.2 Da PI: 8.1262 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 76 | 97 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H XP_010555671.1 76 KCQKCSREFCSPVNYRRHNRLH 97 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.806 | 75 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MPLAKSNPSN SMELVKQDGN DSLDMLIRRA VGRESFLTFP RPENNPVQLF QLLNAFDQPE 60 LPGWPLLTPL KVQMQKCQKC SREFCSPVNY RRHNRLHRCS RRPDKDYGRD RNILGAFWDK 120 LSIDEAKGIA SLKGMMLEEV SGPSVETALM TLIQKPGFTA LPQYYLRAGS DLLDIIQARQ 180 SRFPISSQEL FNILDDASEK TFLCGAAASM QKYIFDGETG KNALEAKNVA ACTSFLLEQK 240 LIEAWLADKD AESLRCQKLL VEEEEAAQRR QAELLERKRK KKLRQQEQRV KEQRTEQKED 300 AKESESTTSE EQEDPAEPSS PLSVVSDSEA QRPDAIPGED SSSLEGSEAL ETNGGANCET 360 QAMISSGACD DGLGNGHNME RRGGQRQMGP FRRLLPSKSQ REMPNGFHSN PVSHIPKPGG 420 MLKNGTNRDA RVSAAANTTK VWSRKADNPR SISQDAAVTL SGQTRNSKVL IGSICVTLGN 480 DGPCGGHDQT DCGEEDERTK NIQAKPPSKQ STVKIWRPVS RHGTKASKQV ENTDKELEPN 540 MILRRSNKGK SATPGEDKIT KAHAAHHGSL QFNSREAKAF LAQRWKEATL AEHVTLVVSQ 600 QGC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 275 | 282 | ERKRKKKL |
2 | 276 | 280 | RKRKK |
3 | 280 | 290 | KKLRQQEQRVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010555671.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010555670.1 | 0.0 | PREDICTED: uncharacterized protein LOC104825103 | ||||
Refseq | XP_010555671.1 | 0.0 | PREDICTED: uncharacterized protein LOC104825103 | ||||
Refseq | XP_010555672.1 | 0.0 | PREDICTED: uncharacterized protein LOC104825103 | ||||
Refseq | XP_010555673.1 | 0.0 | PREDICTED: uncharacterized protein LOC104825103 | ||||
TrEMBL | A0A384LH20 | 0.0 | A0A384LH20_ARATH; Uncharacterized protein | ||||
TrEMBL | Q8RXF0 | 0.0 | Q8RXF0_ARATH; C2H2-like zinc finger protein | ||||
STRING | XP_010555670.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 0.0 | C2H2-like zinc finger protein |