PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555557.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 389aa    MW: 42008.5 Da    PI: 8.2818
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555557.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.41.8e-42100176278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dls+++eyhrrhkvCevhsk+pvv+++gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  XP_010555557.1 100 CLVDGCDSDLSNCREYHRRHKVCEVHSKTPVVTINGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 176
                     9*************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.1E-3592161IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.67697174IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-4098179IPR004333Transcription factor, SBP-box
PfamPF031102.2E-31100173IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDWNFNKPSS GYLSEFDQEP VPDVPQLGES ISFGSQRRGE FSFDLKLGNV GNFSVSASGY  60
DSTVPLMGSA VAKAESSMSS GSLKRARGSG NGNGNQTPFC LVDGCDSDLS NCREYHRRHK  120
VCEVHSKTPV VTINGLKQRF CQQCSRFHSL EEFDEGKRSC RKRLDGHNRR RRKPQPDPVA  180
RPTSFLTSFQ GTKFLQFSSS HMFPTSSVAS PNWSGSGVLG AVANSSGYGN HPSVPSAAKP  240
GIIFPISSPS SSYKASEKRF PFLQGHDNLS SSSSSHNRTT MLCERLTSCI RDSDCALSLL  300
SSSSSHQTLS PDLARLGHRT HENVQQQPRS VPLVVQPLPF LTSEPMDNIL FGGSGIFENP  360
AAAAAAAAGS DGSGNESVSA SQTFPFHWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-30991731084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156173KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555557.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555558.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010555559.10.0PREDICTED: squamosa promoter-binding-like protein 13A
SwissprotB9DI201e-121SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI111e-121SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLS4WVY81e-130S4WVY8_ARAAL; SQUAMOSA promoter binding protein-like protein 13
STRINGXP_010555557.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-113SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]