PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555430.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 307aa    MW: 34845.8 Da    PI: 9.4549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-13138185355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ +++  L  ++P +     kK++Ka++L  A++YIk+Lq
  XP_010555430.1 138 QEHIIAERKRREKLTQRLVALSAMVPGL-----KKMDKASVLGDACKYIKHLQ 185
                     6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-17138204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16139198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-10140188No hitNo description
SMARTSM003535.7E-14141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MATTMNYLPS STKWFSDLEG EEYNVIHSYH MNSFLEDQTL PQSNFASINY TADYNDSSSF  60
DVMEEKPLKL LKTLHVSPTL SSPPPPPPPP PQKIQPSTQI LSFENGGSNA NNSSPERRKD  120
HRPVKRAHSM NRSHSQAQEH IIAERKRREK LTQRLVALSA MVPGLKKMDK ASVLGDACKY  180
IKHLQXRVRE FEEEKKERSM ESIVLFKKSH LILDAGKSDG SNVILPEIEV RVSSKDVMIK  240
IICEKQKSFV TKILAEIEKF RLFIINSSAL PFGATLDITV IAQKERDFDL ALTDLAKKLR  300
SALLEFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148ERKRRE
2144149RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555430.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555430.20.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH25
SwissprotQ9T0727e-93BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1J3E2V31e-104A0A1J3E2V3_NOCCA; Transcription factor bHLH18 (Fragment)
STRINGXP_010555430.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-84bHLH family protein