PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555396.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 311aa    MW: 34515 Da    PI: 4.5096
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.3e-1962115356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_010555396.1  62 KKRRLSVDQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 115
                     566899***********************************************9 PP
2HD-ZIP_I/II128.72.4e-4161153193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk +ydal+ + ++L++++++L +e+++
  XP_010555396.1  61 EKKRRLSVDQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGKYDALRLSFDSLRRDNDALLQEIAK 153
                     69*************************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-1953119IPR009057Homeodomain-like
PROSITE profilePS5007117.00657117IPR001356Homeobox domain
SMARTSM003894.5E-1860121IPR001356Homeobox domain
PfamPF000464.4E-1662115IPR001356Homeobox domain
CDDcd000861.07E-1662118No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2064123IPR009057Homeodomain-like
PRINTSPR000318.7E-68897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000318.7E-697113IPR000047Helix-turn-helix motif
PfamPF021832.3E-16117158IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKRLSISDSV GGLISVCPTT STDEQSPRGY AREYQTMLEG YEEEAAMGEE YSGNGHVGLS  60
EKKRRLSVDQ VKALEKNFEL ENKLEPERKV KLAQELGLQP RQVAVWFQNR RARWKTKQLE  120
KDYGVLKGKY DALRLSFDSL RRDNDALLQE IAKLKAKING EEDNSATESD ASVKEEEMSL  180
PERNLKTLEQ TEPSSPPPLL DHSADLNYRS FTDLRDLLPH VAASSSAAAV AAIADAGSSD  240
SSDSSAIVNE ESSSTARVEP AAVSGGNFFQ FVKTEQTEEH DDFLSGEEAC GFFSDEQPPS  300
LHWYSAADHW T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555396.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6
SwissprotQ940J11e-150ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLE4MW351e-153E4MW35_EUTHA; mRNA, clone: RTFL01-02-C17
TrEMBLV4MKN01e-153V4MKN0_EUTSA; Uncharacterized protein
STRINGXP_010555396.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-120homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]