PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555312.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 277aa    MW: 31443.9 Da    PI: 9.2372
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32199257159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  XP_010555312.1 199 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLADDPRMVITTYEGRHVHS 257
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-34184257IPR003657WRKY domain
SuperFamilySSF1182901.1E-28192258IPR003657WRKY domain
PROSITE profilePS5081129.723194259IPR003657WRKY domain
SMARTSM007742.5E-37199258IPR003657WRKY domain
PfamPF031062.1E-25200256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGTMNHGGLF DEQQEMLNPN PNHLGFFSFP HHNTNLFSSS VSASSSFTSS SSSSPSSLAS  60
PFSGTNCQQP LIKAFVNNMN PSISSFAPND PINLIANLSE TLIPPSASKH RDSSHIDFNH  120
NRLVGGSSQR PVPNPWAWGD EREEQEGCLW SKRSSHGGRD DDHRTALGVS SMKMKKLKSR  180
RKVREPRFCF KTLSEIDILD DGYRWRKYGQ KVVKNTQHPR SYYRCTQDNC RVKKRVERLA  240
DDPRMVITTY EGRHVHSPSH DHDDSLQNQP PLSNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26191256974Probable WRKY transcription factor 4
2lex_A6e-26191256974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555312.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555312.10.0PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB72e-86WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A384L7284e-84A0A384L728_ARATH; WRKY13
TrEMBLC0SVM64e-84C0SVM6_ARATH; Uncharacterized protein At4g39410 (Fragment)
STRINGXP_010555312.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-67WRKY DNA-binding protein 13