PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555252.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 681aa    MW: 75519.5 Da    PI: 6.5148
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.11e-05102125626
                     -SGGGGTS...--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartG...tCkyGdrCkFaHg 26 
                     C+  artG    C+y ++C+F+H+
  XP_010555252.1 102 CPEIARTGdvnSCPYNEKCRFNHD 125
                     66668999999************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.73796127IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.901140165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.706.0E-72325568IPR013785Aldolase-type TIM barrel
SuperFamilySSF513953.56E-62329642No hitNo description
CDDcd028012.34E-92329564No hitNo description
PfamPF012074.6E-51332599IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360413431IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAESGAELAS ETVLEGETRP QPPEPSTNQS SVYQATPEEL VSRSVAPIKK EFLRPPPNRT  60
GNPNDAASAT DSKASQSGLV QEKKSKRQIK RERREKAALN LCPEIARTGD VNSCPYNEKC  120
RFNHDLEAFK AQKPEDIEGQ CPFVTSGVRC AYGLACRFSG THGDHAGASD AKENSEMNTF  180
KKETQKLLWK NKMNFLKADA KLESLGLLGH AKKRNVAADN NAVKTAIGVN CSETTEVAVQ  240
NSASTSEMIE EIDTPKPVET EEVRPSKKPK SENEENCCAG EVDDGMKVEE GKNGHSLIDT  300
ENSIKVVETD GSLKFHPREK KKLIDVRDKL YLAPLTTVGN LPFRRVCKVL GADVTCGEMA  360
MCTNLLQGQA SEWALLRRHS SEDLFGVQIC GAFPDTVARA VELIDQECTV DFIDINMGCP  420
IDIVVNKGAG SALLTKPLRM KNIVGVASSI VETPITIKVR TGFFEGKSRI DSLIADIGNW  480
GATAVTIHGR SRQQRYSKLA DWDYVYQCAK KAPSNLQVIG NGDVFSYLDW NKHKSDCPEL  540
SSCMIARGAL IKPWLFTEIK EQRDWDITSG ERLNILKDFV RFGLEHWGSD TKGVETTRHF  600
LLEWLSYTCR YIPVGLLDII PQRLNWRPPS YYGRDDLETL MSSDSAADWI RISEMLLGKV  660
PDGFTFAPKH KSNAYDRAEN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A9e-2832656427261tRNA-dihydrouridine synthase B
6ei9_B9e-2832656427261tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555252.10.0PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLV4P1E90.0V4P1E9_EUTSA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_010555252.10.0(Tarenaya hassleriana)
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]