PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010555059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C3H | ||||||||
Protein Properties | Length: 703aa MW: 76949.4 Da PI: 6.5081 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.9 | 8.1e-09 | 306 | 326 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + GtCk+Gd C +aHg XP_010555059.1 306 PCPDFKK-GTCKRGDLCEYAHG 326 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.03E-16 | 47 | 168 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.0E-11 | 83 | 156 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.441 | 87 | 180 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.23 | 87 | 117 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 2.4E-5 | 88 | 103 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 1.1E-16 | 89 | 169 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.93E-15 | 89 | 183 | No hit | No description |
PROSITE profile | PS50088 | 11.915 | 122 | 157 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 4.2E-4 | 122 | 154 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 2.4E-5 | 141 | 155 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 6.4E-5 | 301 | 327 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-7 | 306 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.526 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 334 | 364 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 74 | 336 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MCSVSDKLDS GGNSLTSSSE QESESQDKAM NGSIGETESE CSFLALLEFA ADNDVESFKR 60 HLLDASRVNQ IGLWYSRQSF LRKMVLEPRT PLMVAAMYGS VDVVKLILSF QEVDLNMMCG 120 SDKTTALHCA ATGASVDSLD VVKLLLSSGA DPNIPDAHGN RPVDVLAVSR LVSNSKTILQ 180 EILKKDEPIS EDLHASSSSL GSSFRSLSSS PDNDSSLLSS DSVSSPTKPN GADGPFVSEK 240 KEYPIDPSLP DIKSGIYSTD EFRMFSFKIR PCSRAYSHDW TECPFAHPGE NARRRDPRKF 300 HYTCVPCPDF KKGTCKRGDL CEYAHGVFEC WLHPAQYRTR LCKDGMSCNR RVCFFAHTNE 360 ELRPLYASTG SGLPSPRSSS VCASTMDMAT VLNMLPGSPS AAQHSFTPTM SPSGNGMAHP 420 PMGWPQQNIP ALHLPGSNLQ LSRLRSSLNA RDIPAEELSM LQDFEIQRQR QQLVGDMSSP 480 RFMNHSGRVK SPAPSNLDEL YSPEVSSPRF SDQLAVSSIL SPSHKSALLK QSMLAPVKTN 540 LMSPKNVEHP LLQSSFGGSS LGKMSPRAVE PISPMNSRLA SLSQQQLHSR SLSSRDLGSA 600 DVGSPLSPWS RWDQSKGSSK VDWSVQSDEL GRLRKSHSLA NPSDETDVSW VQPLLKESAS 660 RFNPAAAGQA RQEGWSLNPQ NDARESDILD AWLEQLQLDR MVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010555059.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010555058.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1 | ||||
Refseq | XP_019059410.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X2 | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | E4MVH5 | 0.0 | E4MVH5_EUTHA; mRNA, clone: RTFL01-01-B13 | ||||
TrEMBL | V4KTE7 | 0.0 | V4KTE7_EUTSA; Uncharacterized protein | ||||
STRING | XP_010555058.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |