PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554935.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YB

Protein Properties

Length: 183aa MW: 19786.2 Da PI: 4.9178

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	145.1	1.6e-45	31	121	2	92
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 r qdr+lP+anvsrimk++lP naki+kd +++vqecvsef+s++tseas+kc +ekrkt+ngdd+l a+at+Gfe y+epl++yl++yre XP_010554935.1 31 RGQDRLLPVANVSRIMKRALPPNAKIAKDVRDIVQECVSEFVSLITSEASHKCLAEKRKTLNGDDVLGAMATFGFEAYIEPLRIYLMRYRE 121 789***************************************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-44	29	139	IPR009072	Histone-fold
SuperFamily	SSF47113	5.32E-34	33	152	IPR009072	Histone-fold
Pfam	PF00808	9.5E-23	36	100	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.6E-14	64	82	No hit	No description
PRINTS	PR00615	2.6E-14	83	101	No hit	No description
PRINTS	PR00615	2.6E-14	102	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MAEMQGEGAS PGDGGGHESG EDQSPRFAKV RGQDRLLPVA NVSRIMKRAL PPNAKIAKDV 60 RDIVQECVSE FVSLITSEAS HKCLAEKRKT LNGDDVLGAM ATFGFEAYIE PLRIYLMRYR 120 EGDIKGPAKG GDPNATKEAQ PIQSTELPHQ ASSSSQDLAY GDSLAYSSEL MRLYMAFAGS 180 DSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-40	30	121	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-40	30	121	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554935.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019059191.1	1e-129	PREDICTED: nuclear transcription factor Y subunit B-8-like
Swissprot	Q8VYK4	4e-67	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	E4MX36	4e-66	E4MX36_EUTHA; mRNA, clone: RTFL01-13-K14
TrEMBL	V4M7P8	4e-66	V4M7P8_EUTSA; Uncharacterized protein
STRING	XP_010554935.1	1e-133	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	2e-69	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]