PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554754.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 243aa    MW: 26816.5 Da    PI: 8.748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-1163109354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+ErrRR+riNs +++Lr+ll  +      K +Ka+ L k+v+ +k+L
  XP_010554754.1  63 RNHKEAERRRRERINSHLNKLRTLLSCN-----SKTDKATLLAKVVQRVKEL 109
                     58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.91960109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-963109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-1264122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1264118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1066115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.9E-4148212No hitNo description
CDDcd048730.00727148212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQPEDSNSEQ LLYSLLAGND VWRGGGGNAT SSFCGSSTTS YYPLAISGIG ETMAQDRALA  60
ALRNHKEAER RRRERINSHL NKLRTLLSCN SKTDKATLLA KVVQRVKELK QQTLEISEAE  120
TLPSETDEIS VLHFGDCSSD GRIIFKASLC CDDRSDLLPD LTEILKSLQM KTLRAEMATV  180
GGRTRSVLVV AADKEHGVES VHFLQNALKS LLERSRKSLM ERSGGGGGDR SKRRRALEHI  240
IMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554754.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554754.11e-178PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH106
SwissprotO806741e-117BH106_ARATH; Transcription factor bHLH106
TrEMBLV4MCB61e-126V4MCB6_EUTSA; Uncharacterized protein
STRINGXP_010554754.11e-178(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-109bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]