PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554719.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 407aa MW: 44685.9 Da PI: 7.5559

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.3e-11	188	246	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A+rs +RK +i eLe+kv+ L++e ++L +l+ + l se+ XP_010554719.1 188 KRAKRIIANRQSATRSKERKARYILELERKVQILQTEATTLSAQLSLFQRDTNGLSSEN 246 9*****************************************99998887777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-16	184	248	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.576	186	249	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.63E-10	188	239	No hit	No description
Pfam	PF00170	8.6E-10	188	246	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.2E-10	188	243	No hit	No description
CDD	cd14703	1.17E-20	189	238	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MAMCSHPQMN RILSCSRDRG SDGTGMEDPS NPKPNPSNHH LPQCPTPPPA NPGAAAPAPA 60 PFRGPYHRRA HSEVQFRLPE DLELSDPFGG FDDLGSADDL FCSYMDIEKL GSRSTSASAS 120 DSAGPSAPRP DNLVPVENEG GGRDDARNSK PRHRHSLSVD GSSTLDSIEA KKAMAPDKLA 180 ELWVVDPKRA KRIIANRQSA TRSKERKARY ILELERKVQI LQTEATTLSA QLSLFQRDTN 240 GLSSENTELK LRLQAMEQQA KLRDALNEAL KKEVERLKSA TGEMSRSDAY NLGIAMGCMQ 300 YPQSFFQRQP QESQSDAHNL RMPPQFLLFQ PNNRMPNSNI ITSSSSRPLP SAHQPMLVTA 360 SGQSHSFSEA MKQDPLGRLE DLDIGSCGRV SSCFRRSDSV SESSSAM

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MAMCSHPQMN RILSCSRDRG SDGTGMEDPS NPKPNPSNHH LPQCPTPPPA NPGAAAPAPA  60
PFRGPYHRRA HSEVQFRLPE DLELSDPFGG FDDLGSADDL FCSYMDIEKL GSRSTSASAS  120
DSAGPSAPRP DNLVPVENEG GGRDDARNSK PRHRHSLSVD GSSTLDSIEA KKAMAPDKLA  180
ELWVVDPKRA KRIIANRQSA TRSKERKARY ILELERKVQI LQTEATTLSA QLSLFQRDTN  240
GLSSENTELK LRLQAMEQQA KLRDALNEAL KKEVERLKSA TGEMSRSDAY NLGIAMGCMQ  300
YPQSFFQRQP QESQSDAHNL RMPPQFLLFQ PNNRMPNSNI ITSSSSRPLP SAHQPMLVTA  360
SGQSHSFSEA MKQDPLGRLE DLDIGSCGRV SSCFRRSDSV SESSSAM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554719.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010554715.1	0.0	PREDICTED: transcription factor RF2b-like isoform X4
Refseq	XP_010554720.1	0.0	PREDICTED: transcription factor RF2b-like isoform X4
Refseq	XP_019059358.1	0.0	PREDICTED: transcription factor RF2b-like isoform X4
Refseq	XP_019059359.1	0.0	PREDICTED: transcription factor RF2b-like isoform X4
Refseq	XP_019059360.1	0.0	PREDICTED: transcription factor RF2b-like isoform X4
Refseq	XP_019059361.1	0.0	PREDICTED: transcription factor RF2b-like isoform X4
Refseq	XP_019059362.1	0.0	PREDICTED: transcription factor RF2b-like isoform X4
Refseq	XP_019059363.1	0.0	PREDICTED: transcription factor RF2b-like isoform X5
Refseq	XP_019059364.1	0.0	PREDICTED: transcription factor RF2b-like isoform X5
Swissprot	O22873	1e-169	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A178VZR1	1e-167	A0A178VZR1_ARATH; Uncharacterized protein
TrEMBL	V4MJI3	1e-167	V4MJI3_EUTSA; Uncharacterized protein
STRING	XP_010554713.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-145	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]