PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554716.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 475aa MW: 52596.5 Da PI: 8.4001

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.8e-11	256	314	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A+rs +RK +i eLe+kv+ L++e ++L +l+ + l se+ XP_010554716.1 256 KRAKRIIANRQSATRSKERKARYILELERKVQILQTEATTLSAQLSLFQRDTNGLSSEN 314 9*****************************************99998887777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-16	252	316	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.576	254	317	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-9	256	314	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.7E-10	256	311	No hit	No description
SuperFamily	SSF57959	3.73E-10	256	307	No hit	No description
CDD	cd14703	2.44E-20	257	306	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MIQELSLKSN LVRCLRMSVV KSLLKVIEKF PHVKHYREFK VPLALELDVR DLVKSHFGVS 60 YFDSILLAMA MCSHPQMNRI LSCSRDRGSD GTGMEDPSNP KPNPSNHHLP QCPTPPPANP 120 GAAAPAPAPF RGPYHRRAHS EVQFRLPEDL ELSDPFGGFD DLGSADDLFC SYMDIEKLGS 180 RSTSASASDS AGPSAPRPDN LVPVENEGGG RDDARNSKPR HRHSLSVDGS STLDSIEAKK 240 AMAPDKLAEL WVVDPKRAKR IIANRQSATR SKERKARYIL ELERKVQILQ TEATTLSAQL 300 SLFQRDTNGL SSENTELKLR LQAMEQQAKL RDALNEALKK EVERLKSATG EMSRSDAYNL 360 GIAMGCMQYP QSFFQRQPQE SQSDAHNLRM PPQFLLFQPN NRMPNSNIIT SSSSRPLPSA 420 HQPMLVTASG QSHSFSEAMK QDPLGRLEDL DIGSCGRVSS CFRRSDSVSE SSSAM

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MIQELSLKSN LVRCLRMSVV KSLLKVIEKF PHVKHYREFK VPLALELDVR DLVKSHFGVS  60
YFDSILLAMA MCSHPQMNRI LSCSRDRGSD GTGMEDPSNP KPNPSNHHLP QCPTPPPANP  120
GAAAPAPAPF RGPYHRRAHS EVQFRLPEDL ELSDPFGGFD DLGSADDLFC SYMDIEKLGS  180
RSTSASASDS AGPSAPRPDN LVPVENEGGG RDDARNSKPR HRHSLSVDGS STLDSIEAKK  240
AMAPDKLAEL WVVDPKRAKR IIANRQSATR SKERKARYIL ELERKVQILQ TEATTLSAQL  300
SLFQRDTNGL SSENTELKLR LQAMEQQAKL RDALNEALKK EVERLKSATG EMSRSDAYNL  360
GIAMGCMQYP QSFFQRQPQE SQSDAHNLRM PPQFLLFQPN NRMPNSNIIT SSSSRPLPSA  420
HQPMLVTASG QSHSFSEAMK QDPLGRLEDL DIGSCGRVSS CFRRSDSVSE SSSAM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554716.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019059356.1	0.0	PREDICTED: transcription factor RF2b-like isoform X2
Swissprot	O22873	1e-168	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A178VZR1	1e-166	A0A178VZR1_ARATH; Uncharacterized protein
STRING	XP_010554713.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-144	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]