PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554714.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 510aa MW: 56523.5 Da PI: 7.3416

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554714.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.2e-10	291	349	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A+rs +RK +i eLe+kv+ L++e ++L +l+ + l se+ XP_010554714.1 291 KRAKRIIANRQSATRSKERKARYILELERKVQILQTEATTLSAQLSLFQRDTNGLSSEN 349 9*****************************************99998887777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-16	287	351	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.576	289	352	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.08E-10	291	342	No hit	No description
Pfam	PF00170	1.1E-9	291	349	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.4E-10	291	346	No hit	No description
CDD	cd14703	2.17E-21	292	341	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MPLYVCTLQF FETRSYFGGE CNCHGRSLGK ARNPGWGCDR EQDYDSRVEL EVKSGPLPTN 60 VIEKFPHVKH YREFKVPLAL ELDVRDLVKS HFGVSYFDSI LLAMAMCSHP QMNRILSCSR 120 DRGSDGTGME DPSNPKPNPS NHHLPQCPTP PPANPGAAAP APAPFRGPYH RRAHSEVQFR 180 LPEDLELSDP FGGFDDLGSA DDLFCSYMDI EKLGSRSTSA SASDSAGPSA PRPDNLVPVE 240 NEGGGRDDAR NSKPRHRHSL SVDGSSTLDS IEAKKAMAPD KLAELWVVDP KRAKRIIANR 300 QSATRSKERK ARYILELERK VQILQTEATT LSAQLSLFQR DTNGLSSENT ELKLRLQAME 360 QQAKLRDALN EALKKEVERL KSATGEMSRS DAYNLGIAMG CMQYPQSFFQ RQPQESQSDA 420 HNLRMPPQFL LFQPNNRMPN SNIITSSSSR PLPSAHQPML VTASGQSHSF SEAMKQDPLG 480 RLEDLDIGSC GRVSSCFRRS DSVSESSSAM

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MPLYVCTLQF FETRSYFGGE CNCHGRSLGK ARNPGWGCDR EQDYDSRVEL EVKSGPLPTN  60
VIEKFPHVKH YREFKVPLAL ELDVRDLVKS HFGVSYFDSI LLAMAMCSHP QMNRILSCSR  120
DRGSDGTGME DPSNPKPNPS NHHLPQCPTP PPANPGAAAP APAPFRGPYH RRAHSEVQFR  180
LPEDLELSDP FGGFDDLGSA DDLFCSYMDI EKLGSRSTSA SASDSAGPSA PRPDNLVPVE  240
NEGGGRDDAR NSKPRHRHSL SVDGSSTLDS IEAKKAMAPD KLAELWVVDP KRAKRIIANR  300
QSATRSKERK ARYILELERK VQILQTEATT LSAQLSLFQR DTNGLSSENT ELKLRLQAME  360
QQAKLRDALN EALKKEVERL KSATGEMSRS DAYNLGIAMG CMQYPQSFFQ RQPQESQSDA  420
HNLRMPPQFL LFQPNNRMPN SNIITSSSSR PLPSAHQPML VTASGQSHSF SEAMKQDPLG  480
RLEDLDIGSC GRVSSCFRRS DSVSESSSAM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554714.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019059357.1	0.0	PREDICTED: transcription factor RF2b-like isoform X3
Swissprot	O22873	1e-167	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A178VZR1	1e-165	A0A178VZR1_ARATH; Uncharacterized protein
STRING	XP_010554713.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-142	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]