PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554678.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 386aa MW: 43624.1 Da PI: 8.7059

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.7	4.1e-31	80	133	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+++AtPk +l+lm++kgL++++vkSHLQ+YR+ XP_010554678.1 80 PRLRWTPELHLSFVHAVERLGGQDRATPKLVLQLMNIKGLSIAQVKSHLQMYRS 133 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-29	76	135	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.793	76	136	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-16	77	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-22	80	135	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	81	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MTSNTKSSEN SKNFPSNICK TIKKEGVKDN NQEEEEEAEP KEDHQSSSSN NSYVEECSSH 60 RLKIKKFGGS VRPYNRSKTP RLRWTPELHL SFVHAVERLG GQDRATPKLV LQLMNIKGLS 120 IAQVKSHLQM YRSKKSDEHN QGQQGFSFET GTGYTCNLTQ VPMLQSFDQR TSTSLGYGDT 180 SWWSDHRPKI YGNRWRGLTS RDNARSGQAF HGSSNIGDRT NKTISFRFES CATNKNKGFN 240 SNNGEAEADH RSRRSILEDL RTFNESWVRC VSDPLFTTYD PDQAAEGSRN ILKRKRFFPS 300 EDYDQKSYQG LDLSLSLKVS PQTDARTGRG CLLDHGQEHE QDRQDCKSLS LSLSSSCSSK 360 LGLSMTTEED DKRKVSVSAS TLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MTSNTKSSEN SKNFPSNICK TIKKEGVKDN NQEEEEEAEP KEDHQSSSSN NSYVEECSSH  60
RLKIKKFGGS VRPYNRSKTP RLRWTPELHL SFVHAVERLG GQDRATPKLV LQLMNIKGLS  120
IAQVKSHLQM YRSKKSDEHN QGQQGFSFET GTGYTCNLTQ VPMLQSFDQR TSTSLGYGDT  180
SWWSDHRPKI YGNRWRGLTS RDNARSGQAF HGSSNIGDRT NKTISFRFES CATNKNKGFN  240
SNNGEAEADH RSRRSILEDL RTFNESWVRC VSDPLFTTYD PDQAAEGSRN ILKRKRFFPS  300
EDYDQKSYQG LDLSLSLKVS PQTDARTGRG CLLDHGQEHE QDRQDCKSLS LSLSSSCSSK  360
LGLSMTTEED DKRKVSVSAS TLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554678.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010554678.1	0.0	PREDICTED: two-component response regulator ARR14-like
TrEMBL	A0A397ZP06	1e-107	A0A397ZP06_BRACM; Uncharacterized protein
STRING	XP_010554678.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9359	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-105	G2-like family protein