PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554410.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 609aa    MW: 66144.7 Da    PI: 5.1708
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.85.8e-1362406001374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                     lv++L++cAeav++++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        l pp++ + ++ s++l++   f+e++P+lkf+
  XP_010554410.1 240 LVHALMACAEAVQKNNLTLAEALVKQIGLLAVSQAGAMRKVATYFAEALARRIYR--------LsPPQDPPGHSLSDTLQM--HFYETCPYLKFA 324
                     689****************************************************........514555554445666554..5*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taNqaIlea+eg++rvH+iDf+++qGlQWpaL++aLa Rp+gpp +R+Tg+g+p++++++ l+ +g +La++Ae ++v+fe++ lva++l+dl
  XP_010554410.1 325 HFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMEALALRPGGPPAFRLTGIGPPAPDNTDYLHDIGCNLAQLAEVFHVEFEYRGLVANSLADL 419
                     *********************************************************************************************** PP

            GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     e + L+++p   E++aVn+v++lh+ll++++++e+    vL +v++++P++++vveqe++hns+ Fl+rf+e+l+yys++fdsle      ++++
  XP_010554410.1 420 EASVLELRPteIESVAVNSVFELHKLLARPGAIEK----VLGVVRQIKPEIFTVVEQESNHNSPAFLNRFTESLHYYSTMFDSLEGV---GNSQD 507
                     *******998889**********************....*********************************************988...79999 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++++++lg++i+nvvaceg +r+erhe+l++Wr r+e aGF+p++l+++a kqa+++l+ ++ ++gy vee++g+l+lgW++rpL+++SaW+
  XP_010554410.1 508 KVMSEVYLGKQICNVVACEGPDRVERHESLAQWRTRFELAGFSPAHLGSNAFKQASMILSLFNgGQGYGVEENDGCLMLGWHTRPLITTSAWK 600
                     9*******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.2E-3440107IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.1E-3940113No hitNo description
PROSITE profilePS5098565.734214579IPR005202Transcription factor GRAS
PfamPF035142.0E-133240600IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MKRGQNRFRL IDPGSSSSSS SSPVPKGKMV KEEDDGGGMD ELLAVLGYKV RSSEMADVAQ  60
KLEQLEEMMG NVQEDGLSHL ATETVHHNPS ELCTWLDSML TELNPLPSAS TSAVGAGPID  120
MDTSFLTRAE SSTISSIGFG APNQQSRVFD EPSSSDYDLK AIAGNAIYPQ AQNQLVFDSS  180
SSSNHGGNPN KRLKCSISDS VYASTSTAPQ IGDCVGTKMT LSESTRAVVL VDSQENGIRL  240
VHALMACAEA VQKNNLTLAE ALVKQIGLLA VSQAGAMRKV ATYFAEALAR RIYRLSPPQD  300
PPGHSLSDTL QMHFYETCPY LKFAHFTANQ AILEAFEGKK RVHVIDFSMN QGLQWPALME  360
ALALRPGGPP AFRLTGIGPP APDNTDYLHD IGCNLAQLAE VFHVEFEYRG LVANSLADLE  420
ASVLELRPTE IESVAVNSVF ELHKLLARPG AIEKVLGVVR QIKPEIFTVV EQESNHNSPA  480
FLNRFTESLH YYSTMFDSLE GVGNSQDKVM SEVYLGKQIC NVVACEGPDR VERHESLAQW  540
RTRFELAGFS PAHLGSNAFK QASMILSLFN GGQGYGVEEN DGCLMLGWHT RPLITTSAWK  600
LAGGPVMAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-6323559913377Protein SCARECROW
5b3h_D8e-6323559913377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554410.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLA0A1J3D9W30.0A0A1J3D9W3_NOCCA; DELLA protein RGA2
STRINGXP_010554410.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein