 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010554371.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 278aa MW: 30898.3 Da PI: 10.0847 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010554371.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 341 | 3e-104 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82
mdddg+ rn+gyyepa ++k +lglqlmssi er++k+ r+ nl ++++++++++rd m++ ++++ +++k++
XP_010554371.1 1 MDDDGF--RNWGYYEPA-NFKGHLGLQLMSSI-ERNTKPflpgRDPNL-MIGPNGSYHPRDcvvsetpipMNY----GWINQ-------QKDKFF 79
99**99..9********.**************.9**************.************999999999999....89999.......899*** PP
GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke.kkakkkkkksekskk 176
++l+v+ p++++vl++t+ + s+q l+++ r ee + p +e+ +++k++k ++++pk +k kk++k +k+
XP_010554371.1 80 NMLPVNP------PSYSNVLPETSGAPSMQI-----LHPPVSSSRVEE--DPVPGQEEIPQTKKRKPAG---SGSNPKGhSKPKKPRK----PKD 154
****765......899*************99.....333333322222..3334344444444444444...3444443033333333....434 PP
GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
+ +e+ +r+k kks d+v+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+Lek
XP_010554371.1 155 NDGNEHI-QRVKPAKKSFDVVINGVSMDISSLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEK 248
4444444.79************************************************************************************* PP
GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LaaeG+++s p+DLk+hWA+HGtnkfvtir
XP_010554371.1 249 LAAEGFNFSSPIDLKSHWARHGTNKFVTIR 278
*****************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPANFKGH LGLQLMSSIE RNTKPFLPGR DPNLMIGPNG SYHPRDCVVS 60
ETPIPMNYGW INQQKDKFFN MLPVNPPSYS NVLPETSGAP SMQILHPPVS SSRVEEDPVP 120
GQEEIPQTKK RKPAGSGSNP KGHSKPKKPR KPKDNDGNEH IQRVKPAKKS FDVVINGVSM 180
DISSLPVPVC TCTGTPQQCY RWGCGGWQSA CCTTNISMYP LPMSTKRRGA RISGRKMSQG 240
AFKKVLEKLA AEGFNFSSPI DLKSHWARHG TNKFVTIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
