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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010554356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | G2-like | ||||||||
Protein Properties | Length: 261aa MW: 29272.6 Da PI: 6.9497 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.1 | 4.5e-29 | 24 | 80 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGse....kAtPktilelmkvkgLtlehvkSHLQkYR 54 prl+WtpeLH++Fv+av+ LGG++ +AtPk +l++m+vkgLt++hvkSHLQ+YR XP_010554356.1 24 PRLKWTPELHRCFVNAVDLLGGQHmnetEATPKLVLRMMDVKGLTISHVKSHLQMYR 80 8*********************9744447**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.483 | 20 | 84 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 20 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-13 | 23 | 80 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-20 | 24 | 80 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-8 | 25 | 80 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MARCGKSTNV NGNGVRQYVR SPAPRLKWTP ELHRCFVNAV DLLGGQHMNE TEATPKLVLR 60 MMDVKGLTIS HVKSHLQMYR GPRLASGKQE GNSSLRRRQD SGEEHDDMSV HTRKDRHLAP 120 KPSLSQHPTP RGRAEKRISV SASEEDDNEL RMNMTMPHSI IFHPHLLKVE GPENEKNNWE 180 STWREDDDDD EEEECSDCEL SLSLSLNHRL PSSRRSNGSS VSETSEAVSS CSAPFFKDCS 240 ASSSAQRRSL DLNLSISLLG T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-15 | 25 | 83 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-15 | 25 | 83 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-15 | 25 | 83 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-15 | 25 | 83 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010554356.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010554356.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X2 | ||||
Swissprot | Q700D9 | 3e-49 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A078F8F8 | 4e-67 | A0A078F8F8_BRANA; BnaA02g26180D protein | ||||
TrEMBL | A0A398AHD6 | 4e-67 | A0A398AHD6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4ECV8 | 4e-67 | M4ECV8_BRARP; Uncharacterized protein | ||||
STRING | XP_010554355.1 | 1e-169 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 8e-44 | G2-like family protein |