PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554355.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 263aa    MW: 29515.8 Da    PI: 7.1352
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554355.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.14.6e-292480254
         G2-like  2 prlrWtpeLHerFveaveqLGGse....kAtPktilelmkvkgLtlehvkSHLQkYR 54
                    prl+WtpeLH++Fv+av+ LGG++    +AtPk +l++m+vkgLt++hvkSHLQ+YR
  XP_010554355.1 24 PRLKWTPELHRCFVNAVDLLGGQHmnetEATPKLVLRMMDVKGLTISHVKSHLQMYR 80
                    8*********************9744447**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.4832084IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-272080IPR009057Homeodomain-like
SuperFamilySSF466891.97E-132380IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-202480IPR006447Myb domain, plants
PfamPF002492.0E-82580IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MARCGKSTNV NGNGVRQYVR SPAPRLKWTP ELHRCFVNAV DLLGGQHMNE TEATPKLVLR  60
MMDVKGLTIS HVKSHLQMYR GPRLASGKQE GNSSLRRRQD SGEEHDDMSV HTRKDRHLAP  120
KPSLSQHPTP RSRGRAEKRI SVSASEEDDN ELRMNMTMPH SIIFHPHLLK VEGPENEKNN  180
WESTWREDDD DDEEEECSDC ELSLSLSLNH RLPSSRRSNG SSVSETSEAV SSCSAPFFKD  240
CSASSSAQRR SLDLNLSISL LGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-152583357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-152583357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-152583357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-152583357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554355.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554355.10.0PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
SwissprotQ700D97e-49MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078F8F86e-67A0A078F8F8_BRANA; BnaA02g26180D protein
TrEMBLA0A398AHD66e-67A0A398AHD6_BRACM; Uncharacterized protein
TrEMBLM4ECV86e-67M4ECV8_BRARP; Uncharacterized protein
STRINGXP_010554355.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-43G2-like family protein