PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554301.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 495aa    MW: 53697.4 Da    PI: 8.0054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554301.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.66.3e-34221277259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg+nWrKYGqK+vkgsefprsYY+Ct+ gCpvkkkvers  d++v+ei+Y+g+Hnh+
  XP_010554301.1 221 DDGFNWRKYGQKQVKGSEFPRSYYKCTHFGCPVKKKVERSL-DGQVTEIIYKGQHNHQ 277
                     8****************************************.***************8 PP
2WRKY105.13.7e-33391449159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+d k+v++tYeg+Hnh+
  XP_010554301.1 391 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERAATDRKAVITTYEGKHNHD 449
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-30210279IPR003657WRKY domain
SuperFamilySSF1182902.48E-26219279IPR003657WRKY domain
SMARTSM007741.1E-38220278IPR003657WRKY domain
PROSITE profilePS5081123.778221279IPR003657WRKY domain
PfamPF031061.7E-26221277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-36376451IPR003657WRKY domain
SuperFamilySSF1182903.66E-29383451IPR003657WRKY domain
PROSITE profilePS5081137.769386451IPR003657WRKY domain
SMARTSM007746.4E-38391450IPR003657WRKY domain
PfamPF031061.9E-25392449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAEKEEQPIP TSKSAAGTPP RPMISLPPRP FGEMFFNSGV GFSPGPMTLV SNLFSDSDEY  60
RSFSQLLAGA MASPAAAAAA AVALQRPGSS GQVDGGGLNS SGDVDPRFKQ NRPAGLMITQ  120
PPAMFTVPPG LSPATLLDSP SFLGLFSPGQ GAFGMTHQQA LAQVTAQAVQ ANTHMQAQPE  180
YLSSAPPTSV SDSSLAQRES SDLSIQEQQR SQPLNVDKPA DDGFNWRKYG QKQVKGSEFP  240
RSYYKCTHFG CPVKKKVERS LDGQVTEIIY KGQHNHQPPQ NNKRGNRERA NLNGSTVNNP  300
GNSDMASQNQ TNKTWRDQGA SQVTTTEQIS EASDSEEVGN GEAGTEEKDE DEPDPKRRNS  360
TEVRVSEPAA SHRTVTEPRI IVQTTSEFDL LDDGYRWRKY GQKVVKGNPY PRSYYKCTTP  420
GCNVRKHVER AATDRKAVIT TYEGKHNHDV PAARTSSHAA AAAQSRPDNI VAASANSLSQ  480
QQPVARLRLK EEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-42221452878Probable WRKY transcription factor 4
2lex_A1e-42221452878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554301.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554301.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLD7KBF40.0D7KBF4_ARALL; WRKY DNA-binding protein 4
STRINGXP_010554301.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.10.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]