PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554240.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 260aa MW: 29735.4 Da PI: 9.7943

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93	2.4e-29	180	235	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r+ W+ +LH+rF++a++qLGG++ AtPk+i+ +mkv gLt+++vkSHLQkYRl+ XP_010554240.1 180 KQRRYWSRDLHRRFLNALQQLGGAHAATPKQIRGIMKVGGLTNDQVKSHLQKYRLH 235 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.381	177	237	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-26	178	237	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.6E-17	178	237	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-26	180	235	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-5	183	233	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MVKSINKVDY TRKRQTRGEC IETLEEERRK ILVFQREFPL CLELVTQTIE ACKREMSGTA 60 AADNMNSQWE CSEQTNGEYG RPILEEFMPI KRSSSGDEHG SHRSNGRTDD SDTKSDWLKS 120 VQLWNQPDQP TKEERLQEKE TVVGVERNGK ENRKTPETET IGGGDGMKNE AEKDVGVKRK 180 QRRYWSRDLH RRFLNALQQL GGAHAATPKQ IRGIMKVGGL TNDQVKSHLQ KYRLHTRGPS 240 QVLTTNVRLH HIPSAAAINK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	182	VKRKQRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269\|PubMed:19341407, ECO:0000269\|PubMed:22545134, ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554240.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010554240.1	0.0	PREDICTED: myb family transcription factor EFM-like isoform X2
Swissprot	Q9FX67	2e-90	HRS1_ARATH; Transcription factor HRS1
TrEMBL	A0A078ILG6	4e-88	A0A078ILG6_BRANA; BnaC08g15800D protein
STRING	XP_010554240.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13508	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13300.1	8e-93	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Kiba T, et al. Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily. Plant Cell, 2018. 30(4): p. 925-945 [PMID:29622567]