PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HD-ZIP

Protein Properties

Length: 236aa MW: 27129.2 Da PI: 5.0554

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	1e-18	65	117	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq++ Le+ F++++++ ++ +LAk+lgL+ rqV vWFqNrRa+ k XP_010554012.1 65 KHRLTAEQVNLLEKNFQEENKLEPLRKSQLAKNLGLPPRQVAVWFQNRRARSK 117 5679***********************************************98 PP
2	HD-ZIP_I/II	113.4	1.4e-36	63	153	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 e+k+rl++eqv+lLE++F+ee+kLep rK++la++Lgl prqvavWFqnrRAR k kq+Ek+y+ Lk+ yd+l+e++e + + +e+L++e+ XP_010554012.1 63 ERKHRLTAEQVNLLEKNFQEENKLEPLRKSQLAKNLGLPPRQVAVWFQNRRARSKVKQIEKQYDLLKSLYDSLREKHELVLEANEKLKAEV 153 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-18	54	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	59	119	IPR001356	Homeobox domain
SMART	SM00389	2.9E-15	63	123	IPR001356	Homeobox domain
CDD	cd00086	5.95E-15	64	120	No hit	No description
Pfam	PF00046	5.1E-16	65	117	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-19	65	126	IPR009057	Homeodomain-like
PRINTS	PR00031	3.5E-6	90	99	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	94	117	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.5E-6	99	115	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.0E-10	119	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDSGWLSVDR SGSRVNLHSP ENLSLILPGY STVMDMDESS KRGFSTISGH SFNRKYCDHS 60 AYERKHRLTA EQVNLLEKNF QEENKLEPLR KSQLAKNLGL PPRQVAVWFQ NRRARSKVKQ 120 IEKQYDLLKS LYDSLREKHE LVLEANEKLK AEVLTLTEKL QASGIDSQPT NNQNARSFPN 180 DPEEKPDETM SSSAALNPAA DDEDNFSDVF MAAEQQTNDE PFDWWVWQSI SQPLWI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	119	RRARSKVKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554012.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010554012.1	1e-175	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
Swissprot	Q02283	2e-38	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
STRING	XP_010554012.1	1e-175	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16382	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	9e-41	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]