PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010553679.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 362aa MW: 40642.5 Da PI: 9.7913

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010553679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.9	8.9e-08	244	281	17	54
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 A+rsR RK+++i+eLe+ v++L+ae ++ el+ l++ XP_010553679.1 244 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELDFLNQ 281 89************************999999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0033	231	292	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.08E-15	236	283	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-5	244	286	No hit	No description
SuperFamily	SSF57959	1.37E-5	244	286	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MASSKGSQNV RNLMYPGKHA LLPPKIPFPS VSASYAEYIP SGFIGSKPVQ RPRGEKAHHQ 60 RTSSESHLIE EQPSWLDDLL NEPESPARRS GHRRSSSDSF AYQDAVNASN VSLTLNDFKH 120 RSMVSAPQGG IPEFDHSKNA QDVSLYSDSG FVKQRNIPWD YLVASGARPN GLPFARESIG 180 PQNRGAFNMS QEADSVTFLP TEAKNSSESL SHDPTKVSPE KLNHNPKPIT PEADNTIRVK 240 QQFAQRSRVR KLQYIAELER NVQALQAEGS EVSAELDFLN QRNLVLSMEN KALKQRLESL 300 AQEKLIKHLE QEVLEREIGR LRALYHQPQK LLTSHHRRAT SKELDSWLVK PSPKSKNSDA 360 YP

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MASSKGSQNV RNLMYPGKHA LLPPKIPFPS VSASYAEYIP SGFIGSKPVQ RPRGEKAHHQ  60
RTSSESHLIE EQPSWLDDLL NEPESPARRS GHRRSSSDSF AYQDAVNASN VSLTLNDFKH  120
RSMVSAPQGG IPEFDHSKNA QDVSLYSDSG FVKQRNIPWD YLVASGARPN GLPFARESIG  180
PQNRGAFNMS QEADSVTFLP TEAKNSSESL SHDPTKVSPE KLNHNPKPIT PEADNTIRVK  240
QQFAQRSRVR KLQYIAELER NVQALQAEGS EVSAELDFLN QRNLVLSMEN KALKQRLESL  300
AQEKLIKHLE QEVLEREIGR LRALYHQPQK LLTSHHRRAT SKELDSWLVK PSPKSKNSDA  360
YP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010553679.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010553678.1	0.0	PREDICTED: uncharacterized protein At4g06598-like
Refseq	XP_010553679.1	0.0	PREDICTED: uncharacterized protein At4g06598-like
Refseq	XP_010553680.1	0.0	PREDICTED: uncharacterized protein At4g06598-like
Swissprot	Q8W3M7	2e-61	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	D7KY87	1e-167	D7KY87_ARALL; Predicted protein
STRING	XP_010553678.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-155	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]