PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553649.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 280aa    MW: 29989.6 Da    PI: 6.051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.5e-11162209455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_010553649.1 162 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 209
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-18156227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.49E-11156213No hitNo description
Gene3DG3DSA:4.10.280.104.7E-18158226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-8162209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDPGGMMNEG GPYNLSEIWQ FPINGAPVGD SSMRGGGVVF GGPNLAQQFA DSSLDGTTCG  60
GVPACLSHGL PPQAAVSGVS GSRKRRVAPE DEAAKVVSTS NGDGANDGDS KRQKTGGCGD  120
EGCDGRAETE PAMKGAEQKK QVPEALKDYI HVRARRGQAT DSHSLAERAR REKISERMKI  180
LQDLVPGCNK VIGKALVLDE IINYIQSLQR QVEFLSMKLE AVNSRMTPGI EVFPPKEFAQ  240
QHFEDPGMQF GSQPTRDYIR GASPEWLHMQ VGGGGFDRTS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553649.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553649.10.0PREDICTED: transcription factor BPE-like
SwissprotQ0JXE71e-101BPE_ARATH; Transcription factor BPE
TrEMBLV4KDL11e-143V4KDL1_EUTSA; Uncharacterized protein
STRINGXP_010553649.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-133BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]