PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553472.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 445aa    MW: 48656 Da    PI: 8.7775
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.3e-09125145526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++++  G CkyG++C+F H+
  XP_010553472.1 125 VCKYWMS-GNCKYGEQCRFLHS 145
                     6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509781.06E-572222IPR017986WD40-repeat-containing domain
PROSITE profilePS5010314.455120147IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7121146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-7125145IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-7125145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.107.0E-40148439IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.26E-42149199IPR017986WD40-repeat-containing domain
SMARTSM003200.027151190IPR001680WD40 repeat
PfamPF004000.035155189IPR001680WD40 repeat
PROSITE profilePS5008211.778158199IPR001680WD40 repeat
PROSITE profilePS5029418.774158360IPR017986WD40-repeat-containing domain
PRINTSPR003202.4E-7177191IPR020472G-protein beta WD-40 repeat
SMARTSM0032045230267IPR001680WD40 repeat
SuperFamilySSF509783.26E-42237439IPR017986WD40-repeat-containing domain
SMARTSM003205.5E-4274311IPR001680WD40 repeat
PfamPF004006.5E-4279311IPR001680WD40 repeat
PROSITE profilePS5008211.712281320IPR001680WD40 repeat
PRINTSPR003202.4E-7298312IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780298312IPR019775WD40 repeat, conserved site
SMARTSM003203.9E-4314351IPR001680WD40 repeat
PfamPF004000.025316350IPR001680WD40 repeat
PROSITE profilePS500828.904321360IPR001680WD40 repeat
PRINTSPR003202.4E-7338352IPR020472G-protein beta WD-40 repeat
SMARTSM0032015355398IPR001680WD40 repeat
SMARTSM003209.1401438IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MTLGAAKQYS DRKMTCRVNR YQDSATDIVG RRPSAPYYRR QRNGPYKGSR NLVWTREQSR  60
PSPDEDQPQK KAVYGSKKSP VSSISDSGPH HPRNNAAYGS NNSSVSSVRG SSLGNRVTPK  120
SEGNVCKYWM SGNCKYGEQC RFLHSWCSCP GFKMLAELEG HKKDLKGIVL PLGSDGFISA  180
SDDGTLRVWE YSKGQCMRVM NLGAEAGSLI SEGRWIFIGM PNAVKALNVQ TAKDFHLEGP  240
VGQVHAMIVA NEMLFAGASS GMISVWKGNT ESDPFKYATS LKGHDGAVVC FTVGGRNLYS  300
GSVDQTIKVW DLDTLQCTMT LRQHTDTVTS LLCWDRYLIS GSLDGSVKAW AFSQSGELEA  360
IFTHRLGHGV CALLGMTDGD VKPIIFCSCE NNTIYVYDLP SFTERGRIFS THAVGTLTLG  420
GDGQIYTGDR SGRLRVWSLG GQIAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-20884411324Tako8
6g6n_A2e-20884411324Tako8
6g6n_B2e-20884411324Tako8
6g6n_C2e-20884411324Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553472.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553470.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
RefseqXP_010553472.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR91e-168C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLV4L9701e-179V4L970_EUTSA; Uncharacterized protein
STRINGXP_010553470.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.11e-162C3H family protein